View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_77 (Length: 275)
Name: NF2014_low_77
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 38547997 - 38547745
Alignment:
| Q |
18 |
acaactgagctaagtttaccgggacttagaatgatacatttaatcgttaagtaatagtcatgatctattagtactagttttattattgatttgatacaaa |
117 |
Q |
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| T |
38547997 |
acaactgagttaagtttatcgggacttagaatgatacatttaatcgttaagtaatagtcatgatctattagtagtagttttattattgatttgatacaaa |
38547898 |
T |
|
| Q |
118 |
atatcattgctnnnnnnntcctactaaaaaatcaaatactcacaatctttttgtgacttatattgaaacctaagacagtgaccatgaagtggataggtcg |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38547897 |
atatcattgctaaaaaaatcctactaaaaaatcaaatactcacaatctttttgtgacttatatttaaacctaagacagtgaccatgaagtggataggtcg |
38547798 |
T |
|
| Q |
218 |
gaatggaggtttctttgtggtccttttctttgacactatatatctctgctcct |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
38547797 |
gaatggaggtttctttgtggtccttttctttgacactatatatgtctggtcct |
38547745 |
T |
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