View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_81 (Length: 270)
Name: NF2014_low_81
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_81 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 32601006 - 32601256
Alignment:
| Q |
2 |
aaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggccc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32601006 |
aaaatgaagaaaataagtgagttatcatattaattttacctattccagttatcttcaatatctcctgttgttctccaactatttcccacacttttggccc |
32601105 |
T |
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| Q |
102 |
atgtagctggatcttcccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatcc |
201 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601106 |
atgtagcaggatcttcccatcccctatgtttcaaaaaagaaattataatgaaatataaaatgaaatatcaattatgtatgagaaacattatcaccaatcc |
32601205 |
T |
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| Q |
202 |
agctcaccattcacacatagagaagaagattggccttccagattttaataa |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601206 |
agctcaccattcacacatagagaagaagattggccttccagattttaataa |
32601256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 32590551 - 32590785
Alignment:
| Q |
18 |
gtgagttatcatattaattttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttc |
117 |
Q |
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|||| |||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32590551 |
gtgaattatcatattaattttacctatgccaattatctttaatatctcctgttgttctccaactatttcccacacttttggcccatgttgctggatcttc |
32590650 |
T |
|
| Q |
118 |
ccatcccctatgtttcaaaaaagaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacac |
217 |
Q |
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| T |
32590651 |
ctttcccctatgtttcaaaaaagcaagtataataaaatagaaaatgaaatatcaattatgtatgagaaacattatcactaattcaactcaccattcacac |
32590750 |
T |
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| Q |
218 |
atagagaagaagattggccttccagattttaataa |
252 |
Q |
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| T |
32590751 |
acagagaagaagattggccttccagattttaataa |
32590785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 24883258 - 24883217
Alignment:
| Q |
204 |
ctcaccattcacacatagagaagaagattggccttccagatt |
245 |
Q |
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| T |
24883258 |
ctcaccattcacacaaagagtagaagattggccttccagatt |
24883217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 24883434 - 24883380
Alignment:
| Q |
39 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacact |
93 |
Q |
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| T |
24883434 |
acctatcccatttatcttcgatatctgatgttgttctccaactatttcccacact |
24883380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 252
Target Start/End: Original strand, 34578391 - 34578604
Alignment:
| Q |
39 |
acctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtttcaaaaa |
138 |
Q |
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|||| ||||| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| | ||| |
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| T |
34578391 |
acctcttccaattatcttctatatcacccgtggttctccaactatttcccacacttttggcccacgttgcaggatcttcccatcccctgaattttagaaa |
34578490 |
T |
|
| Q |
139 |
agaaattagaatgaaatagaaaatgaaatatcaattatgtatgagaaacattatcaccaatccagctcaccattcacacatagagaagaagattggcctt |
238 |
Q |
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|||| | || ||||||||||||||||||| |||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||| |
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| T |
34578491 |
agaattaagtgagaaatagaaaatgaaatattgtttatgtatgagaaacaccgcgatcaattcaactcaccattcacacatagagaagaagattggcctt |
34578590 |
T |
|
| Q |
239 |
ccagattttaataa |
252 |
Q |
| |
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|| || |||||||| |
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| T |
34578591 |
ccggagtttaataa |
34578604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 34594089 - 34594183
Alignment:
| Q |
37 |
ttacctattccagttatcttcaatatctccagttgttctccaactatttcccacacttttggcccatgtagctggatcttcccatcccctatgtt |
131 |
Q |
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|||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
34594089 |
ttacctattccaattatcttcaatatcacctgttgttctccaactatttcccacactttttgcccatgttgctgggtcttcccatcccctatgtt |
34594183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 35124249 - 35124294
Alignment:
| Q |
204 |
ctcaccattcacacatagagaagaagattggccttccagattttaa |
249 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
35124249 |
ctcaccattcacacatagagaagaagattggtcttccagagtttaa |
35124294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Original strand, 34594260 - 34594302
Alignment:
| Q |
204 |
ctcaccattcacacatagagaagaagattggccttccagattt |
246 |
Q |
| |
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|||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
34594260 |
ctcaccattcacacattgagaagaagattgaccttccagattt |
34594302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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