View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_83 (Length: 264)
Name: NF2014_low_83
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 17992933 - 17993167
Alignment:
| Q |
18 |
agccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatcat |
117 |
Q |
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| T |
17992933 |
agccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatcat |
17993032 |
T |
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| Q |
118 |
tttcttatattttcttctcttcactctcatcccccgtcatttcattctccttaaagaatttcaattgacgacctcatgtatcttcactttctttcccgcc |
217 |
Q |
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| T |
17993033 |
tttcttatattttcttctcttcactctcat-ccccgtcatttcattctccttaaagaatttcaattgacgacctcgtgtatcttcactttctttctcgcc |
17993131 |
T |
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| Q |
218 |
ataaaggagcaactttgttcaaacatgttcactgcg |
253 |
Q |
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| T |
17993132 |
ataaaggagcaactttgttcaaacatgttcactgcg |
17993167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 171
Target Start/End: Complemental strand, 19318921 - 19318765
Alignment:
| Q |
15 |
tatagccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacat |
114 |
Q |
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|||| |||||||||| ||| |||| ||||||| ||| ||| |||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||| |
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| T |
19318921 |
tataaccaacagaagattcaatttcttcattctataattgattatcttcaaaacatagaaaattaatcaaccataaaactagaaatcgaaagaaaaacat |
19318822 |
T |
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| Q |
115 |
cattttcttatattttcttctcttcactctcatcccccgtcatttcattctccttaa |
171 |
Q |
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| T |
19318821 |
cattttcttagattttcttctcctcactctcatccctcgtcatttcattctctttaa |
19318765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 28729266 - 28729422
Alignment:
| Q |
15 |
tatagccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacat |
114 |
Q |
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||||||||||| |||||| |||| ||||||||||| |||||||||| |||| |||||||||| ||||||||||||| || |||| |||| |||||||| |
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| T |
28729266 |
tatagccaacataagctttaatttcttcattccataattgtttatctctaaaacttagaaaattgatcaaccataaaactagaaattgaaataaaaacat |
28729365 |
T |
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| Q |
115 |
cattttcttatattttcttctcttcactctcatcccccgtcatttcattctccttaa |
171 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
28729366 |
atttttcttatattttcttctcttcactctcatcccttgacatttcattctctttaa |
28729422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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