View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_85 (Length: 257)
Name: NF2014_low_85
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48748957 - 48748719
Alignment:
| Q |
1 |
agaatgagagatagatgatttaagaaggttgaagtgaattgaaaaggtggagaaggggtgaggggtatttataagggtgaaaaatgatcaaatgaagaga |
100 |
Q |
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| T |
48748957 |
agaatgtgagatagatgatt-aagaaggttgaagtgaattgaaaaggtggagaaggggtgaggggtatttataagggtgaaaaatgatcaaatgaagaga |
48748859 |
T |
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| Q |
101 |
agaggtgggttaactagtgtttaaatgagataaatctcttccaacttaactaaaagtttgtgtttgaatacattcatcatgaaaatgaaacaattttaag |
200 |
Q |
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| T |
48748858 |
aaaggtgggttaactagtgtttaaatgagataaatctcttccaacttaattaaaagtttgtgtttgaatacattcatcatgaaaatgaaataattttaag |
48748759 |
T |
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| Q |
201 |
atattttgatgaaaagttttgttttctattgccctcattg |
240 |
Q |
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| T |
48748758 |
atattttgatgaaaagttttgttttctattgcgctcattg |
48748719 |
T |
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