View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_9 (Length: 500)

Name: NF2014_low_9
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_9
NF2014_low_9
[»] chr1 (9 HSPs)
chr1 (19-494)||(40689681-40690156)
chr1 (237-313)||(34710513-34710589)
chr1 (144-196)||(34714059-34714111)
chr1 (247-313)||(34714219-34714285)
chr1 (400-488)||(34714363-34714448)
chr1 (19-78)||(34710340-34710399)
chr1 (425-476)||(34710689-34710740)
chr1 (19-78)||(34713964-34714023)
chr1 (46-86)||(27509163-27509203)
[»] chr7 (2 HSPs)
chr7 (21-97)||(7687870-7687946)
chr7 (18-91)||(40243778-40243851)
[»] chr2 (3 HSPs)
chr2 (25-99)||(41234713-41234787)
chr2 (46-98)||(35505956-35506008)
chr2 (246-315)||(35506177-35506246)
[»] chr4 (2 HSPs)
chr4 (238-315)||(20925729-20925806)
chr4 (19-95)||(20926000-20926076)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Original strand, 40689681 - 40690156
Alignment:
Q  19 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaagctttagcaattgctcaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689681 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaagctttagcaattgctcaag 40689780  T
Q  119 agaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttcccttcaattgaataacaatggtaagggaaatctaca 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40689781 agaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttctcttcaattgaataacaatggtaagggaaatctaca 40689880  T
Q  219 tggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40689881 tggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgc 40689980  T
Q  319 caccgcgcgccggtgggaacatctgcagccaacactacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg 418  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689981 caccgtgcaccggtgggaacttctgcagccaacaccacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatg 40690080  T
Q  419 ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40690081 ttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc 40690156  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 34710513 - 34710589
Alignment:
Q  237 caacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 313  Q
    |||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34710513 caacaaatccaaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34710589  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 34714059 - 34714111
Alignment:
Q  144 tcaagagtttcaattcaaacccaatcataaatcaatttcccttcaattgaata 196  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  34714059 tcaagagtttcaattcaaaaccaataataaatcaatttcccttaaattgaata 34714111  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 34714219 - 34714285
Alignment:
Q  247 aaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 313  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34714219 aaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34714285  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 400 - 488
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
Q  400 cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt 488  Q
    ||||||||||||| |||||| |   ||||||||||||||||||||||||||||| || |||| ||||| ||||| |  |||||||||||    
T  34714363 cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt 34714448  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 34710340 - 34710399
Alignment:
Q  19 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 78  Q
    |||| ||||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||    
T  34710340 tatgcatgcaaaacatgcaacaaaacattcacttcatctcaagcacttggaggccataga 34710399  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 476
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
Q  425 ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc 476  Q
    ||||||||||||||||||||||||||||| || |||| ||||| ||||||||    
T  34710689 ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc 34710740  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 34713964 - 34714023
Alignment:
Q  19 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 78  Q
    |||| ||||||||||||||| | ||| ||| ||||||||||||| ||||| |||||||||    
T  34713964 tatgcatgcaaaacatgcaaaaaaactttcacttcatttcaagcacttggaggccataga 34714023  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 27509203 - 27509163
Alignment:
Q  46 ttcccttcatttcaagcccttggtggccatagagcaagtca 86  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  27509203 ttcccttcattccaagcacttggtggacatagagcaagtca 27509163  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 7687946 - 7687870
Alignment:
Q  21 tgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaa 97  Q
    |||||| |||||||| || |||  ||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7687946 tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaa 7687870  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 40243851 - 40243778
Alignment:
Q  18 atatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaaga 91  Q
    ||||||||||||||| ||||||| || |||| | || ||||||||||||||||||||||| || || |||||||    
T  40243851 atatgaatgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaaga 40243778  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 41234713 - 41234787
Alignment:
Q  25 tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa 99  Q
    |||||||||||||||| |  |||| |||| ||||||||  | ||||||||||||||||||||||||| |||||||    
T  41234713 tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa 41234787  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 35505956 - 35506008
Alignment:
Q  46 ttcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaa 98  Q
    |||| ||||||||||||  | ||||| ||||||||||||||||||||||||||    
T  35505956 ttccattcatttcaagcgttgggtggacatagagcaagtcacaagaaaccaaa 35506008  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 35506177 - 35506246
Alignment:
Q  246 taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 315  Q
    ||||||||||| |||||| || |||||  ||||||||||||| ||||||||| | ||||| || ||||||    
T  35506177 taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg 35506246  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 20925806 - 20925729
Alignment:
Q  238 aacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 315  Q
    |||||| | ||| ||||||||||||||||||||||||| || |||||||| || |||||| | ||||| || ||||||    
T  20925806 aacaaggccaagattcatgagtgttccatttgtggttcagagttcacatccggacaagcattgggtggacacatgagg 20925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 20926076 - 20926000
Alignment:
Q  19 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaacc 95  Q
    ||||||||||||||||| |||||||| || ||||| ||||||||  | ||||| || || ||||||||||| |||||    
T  20926076 tatgaatgcaaaacatgtaacagaacttttccttcttttcaagctttgggtggtcacagggcaagtcacaaaaaacc 20926000  T

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