View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2014_low_93 (Length: 250)
Name: NF2014_low_93
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_93 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 8448752 - 8448985
Alignment:
| Q |
18 |
taaacaagcactatattcctctactttttctcatccttttctttgcttttcatccaataaaacgtttcctctctttttgtcccttcacttttcacaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448752 |
taaacaagcactatattcctctactttttctcatccttttctttgcttttcatccaataaaacgtttcctctctttttgtcccttcacttttcacaaaac |
8448851 |
T |
|
| Q |
118 |
gcgtgcccgttttactatgattacgtcactcccatccttattaacctagtaatgactattttattctccttaagtcagaaacctaagcatgcattctgtt |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8448852 |
gcgtgcccgttttactattattacgtcactcccatccttattaacctagtaatgactattttattctccttaagtcagaaacctaagcatgcattctgtt |
8448951 |
T |
|
| Q |
218 |
g-ttctctgaaaaattagcacattctgtttcctt |
250 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |
|
|
| T |
8448952 |
gtttctctgaaaaattagcacattctgtttcctt |
8448985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University