View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_95 (Length: 249)
Name: NF2014_low_95
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_95 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 43759941 - 43759715
Alignment:
| Q |
16 |
gagacaatttcggtgtcattaatttttaatcataatcagtggcacaagattaacattcatcatgtgtgtatcatgacattaaattaaattcaagacaaaa |
115 |
Q |
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| T |
43759941 |
gagacaatttcggtgtcattaatttttaatcataatcagtggcacaagattaacattcatcatgtgtgtatcatgacattaaattaaattcaagacaaaa |
43759842 |
T |
|
| Q |
116 |
aggaaataatttatttaaaatattttctatataaagaataatttgcccgtacgcgtcaagcgtaagtaataaataatagagcgtgacgcgaattaaaatg |
215 |
Q |
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| T |
43759841 |
aggaaataatttatttaaaatattttctatataaagaataatttgcccgtacgcgtcaagcgtaag---taaataatagagcgtgacgcgaattaaaatg |
43759745 |
T |
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| Q |
216 |
tggtaatgatataattaaaaatctgagagc |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43759744 |
tggtaatgatataattaaaaatctgagagc |
43759715 |
T |
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