View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_97 (Length: 248)
Name: NF2014_low_97
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_97 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 15546 - 15723
Alignment:
| Q |
6 |
gtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccaca |
105 |
Q |
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| T |
15546 |
gtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattccctca |
15645 |
T |
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| Q |
106 |
aatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaacaaaattt |
183 |
Q |
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| T |
15646 |
aatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaccaaaattt |
15723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 17582051 - 17581878
Alignment:
| Q |
6 |
gtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccaca |
105 |
Q |
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| T |
17582051 |
gtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattccctca |
17581952 |
T |
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| Q |
106 |
aatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaacaaa |
179 |
Q |
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| T |
17581951 |
aatgtttcacaacctcagcaagaaagatatatatgatagtcaggctaggaatgcttttacggtatgtcaccaaa |
17581878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 181
Target Start/End: Original strand, 271625 - 271800
Alignment:
| Q |
6 |
gtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccaca |
105 |
Q |
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| T |
271625 |
gtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgatccagaaacctctaaatatattgcatttgttcaattccctca |
271724 |
T |
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| Q |
106 |
aatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaacaaaat |
181 |
Q |
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| T |
271725 |
aatgtttcacaaccttagcaaaaaagacatctatgataatcaatctaggactgcttttaaggtaaatcaacaaaat |
271800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 16383144 - 16382956
Alignment:
| Q |
6 |
gtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattcccaca |
105 |
Q |
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| T |
16383144 |
gtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattccctca |
16383045 |
T |
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| Q |
106 |
aatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaacaaaatttgaagctcttta |
194 |
Q |
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| T |
16383044 |
aatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcaagctcttta |
16382956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 34818725 - 34818664
Alignment:
| Q |
87 |
cttttgttcaattcccacaaatgtttcacaaccttagcaagaaagacatatatgatagtcag |
148 |
Q |
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| T |
34818725 |
cttttgttcaatttcctcagaaatttcacaacattagcaagaaagacatctatgacagtcag |
34818664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 32721903 - 32721839
Alignment:
| Q |
84 |
ttgcttttgttcaattcccacaaatgtttcacaaccttagcaagaaagacatatatgatagtcag |
148 |
Q |
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| T |
32721903 |
ttgcttttgttcaattccctcagaaatttcacaatataagcaagaatgacatatatgacagtcag |
32721839 |
T |
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