View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2014_low_99 (Length: 245)
Name: NF2014_low_99
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_99 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 38820537 - 38820751
Alignment:
| Q |
20 |
attctatggtctttcttacatcctgaaaattataaaggacctaaggttatcgggtttgatatcgagttgtcgatgtgtnnnnnnnnngtatcagaagaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38820537 |
attctatggtctttcttacatcctgaaaattataaaggacctaaggttatcgggtttgatatcgagttgtcgatgtgtgaaaataaagtatcagaagaag |
38820636 |
T |
|
| Q |
120 |
aaaccaattttgagaccgaatgtgcaaccttgaatctatgcaatggccattcgtgtcttattattcagttatgtcatttagattcatttcccacatcatt |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38820637 |
aaaccaattttgagaccgaatgtgcaatcttgaatctatgcaatggtcattcgtgtcttattattcagctatgtcatttagattcatttcccacatcatt |
38820736 |
T |
|
| Q |
220 |
gcttaatattcttcg |
234 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
38820737 |
gcttaattttcttcg |
38820751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 38830935 - 38831148
Alignment:
| Q |
23 |
ctatggtctttcttacatcctgaaaattataaaggacctaaggttatcgggtttgatatcgagttgtcgatgtgtnnnnnnnnngtatcagaagaagaaa |
122 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||| ||||| ||||| |||||||| ||| |||||||||| |||| | |||||||| ||||||| |
|
|
| T |
38830935 |
ctatggtccttcttacgtcctgcaaattataatggaccaaaggtaatcgggttcgatgtcgagttgtcaatgtttgaaaataaggtatcagaggaagaaa |
38831034 |
T |
|
| Q |
123 |
ccaattttgagaccgaatgtgcaaccttgaatctatgcaatggccattcgtgtcttattattcagttatgtcatttagattcatttcccacatcattgct |
222 |
Q |
| |
|
| | | ||||||||||||| || | ||||| |||||||| | |||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
38831035 |
tctacgacaattccgaatgtgcaactctgcacctatgtaatggccagttgtgtcttattattcagctatgtcatttagattcagttcccacatcattgct |
38831134 |
T |
|
| Q |
223 |
taatattcttcgac |
236 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
38831135 |
taactttcttcgac |
38831148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 234
Target Start/End: Original strand, 28159286 - 28159395
Alignment:
| Q |
125 |
aattttgagaccgaatgtgcaaccttgaatctatgcaatggccattcgtgtcttattattcagttatgtcatttagattcatttcccacatcattgctta |
224 |
Q |
| |
|
||||| |||||||||| |||||| || ||||||| | ||| |||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
28159286 |
aatttcgagaccgaatatgcaactctgcatctatgtattggttattcatgtcttattattcagtcatgtcattaagattcatttcccacaacattgctta |
28159385 |
T |
|
| Q |
225 |
atattcttcg |
234 |
Q |
| |
|
|| ||||||| |
|
|
| T |
28159386 |
attttcttcg |
28159395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 226
Target Start/End: Original strand, 16081874 - 16081975
Alignment:
| Q |
125 |
aattttgagaccgaatgtgcaaccttgaatctatgcaatggccattcgtgtcttattattcagttatgtcatttagattcatttcccacatcattgctta |
224 |
Q |
| |
|
||||| |||||||||| |||||| || ||||||| | ||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
16081874 |
aatttcgagaccgaatatgcaactctgcatctatgtattggttatttgtgacttattattcagttatgtcattaagattcatttcccacatcattactta |
16081973 |
T |
|
| Q |
225 |
at |
226 |
Q |
| |
|
|| |
|
|
| T |
16081974 |
at |
16081975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University