View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20150_high_5 (Length: 348)
Name: NF20150_high_5
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 341
Target Start/End: Complemental strand, 12258879 - 12258549
Alignment:
| Q |
15 |
atttatttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12258879 |
atttatttcctcaaacttggcacgattgattgatgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagt |
12258780 |
T |
|
| Q |
115 |
gatctttttgcactctcac----tgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagt |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12258779 |
gatctttttgcactctcacaagctgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctcttgaactcttctacaaagt |
12258680 |
T |
|
| Q |
211 |
aactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12258679 |
aactcaccattctattatcaaagtcctctcctccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacac |
12258580 |
T |
|
| Q |
311 |
atcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12258579 |
atcaaaagtgccaccaccaagatcaaagaca |
12258549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 12245698 - 12245378
Alignment:
| Q |
21 |
ttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatctt |
120 |
Q |
| |
|
|||||||||||| || |||||||| || | ||||||||||||||| | | |||||||||||| |||||||||||||||||||||| | |||||| |||| |
|
|
| T |
12245698 |
ttcctcaaactttgcccgattgatggatgaagaaaaatcaatgccttgaaataaagaatctacctcaatagttgcaacaacaagaaacgaaagtattctt |
12245599 |
T |
|
| Q |
121 |
tttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactca |
216 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||| ||| ||| | || |||| ||||| | ||||||||||||||| ||||| | | ||||||| | | |
|
|
| T |
12245598 |
tttgccctctcacaagcagttctcaatctcctcaaggcttttgaacttgcactaatatccaatttgttctttctcttgaactcctgtgcaaagtagttta |
12245499 |
T |
|
| Q |
217 |
ccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaa |
316 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||| ||||||||||| || ||||||||||| |||| ||||||||||| ||||| | ||| || ||||| |
|
|
| T |
12245498 |
ccattctattatcaaaatcctctcctccaaggtgagtgtttccagcagtggccttaacttggaagatgttatccttaatagttaggatagaaacgtcaaa |
12245399 |
T |
|
| Q |
317 |
agtgccaccaccaagatcaaa |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
12245398 |
agtgccaccaccaagatcaaa |
12245378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 337
Target Start/End: Original strand, 7542103 - 7542422
Alignment:
| Q |
22 |
tcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatcttt |
121 |
Q |
| |
|
|||||||||||||| | |||||| || | |||||| |||||||| | | |||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
7542103 |
tcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaatagtggcaacaacaaggaaagaaagtgatcttt |
7542202 |
T |
|
| Q |
122 |
ttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcac |
217 |
Q |
| |
|
|||| ||||||| ||| |||| |||||||| ||| ||||||| ||||| || || ||||||||||||||||| ||||||| ||||||||| || | |
|
|
| T |
7542203 |
ttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttctttctcttgaactcttgtacaaagtagttcgc |
7542302 |
T |
|
| Q |
218 |
cattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaa |
317 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||| ||||| || ||||||||||| ||| || ||||||| ||||||| ||||||||||||| |
|
|
| T |
7542303 |
cattctattatcaaagtcttctccaccaaggtgagtgttgccagcagtggccttaacttggaagttgttgcccttaatcgttagtaaagacacatcaaaa |
7542402 |
T |
|
| Q |
318 |
gtgccaccaccaagatcaaa |
337 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
7542403 |
gtgccaccgccaagatcaaa |
7542422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 337
Target Start/End: Original strand, 12234563 - 12234885
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatc |
118 |
Q |
| |
|
||||||||||||||||| | |||||| || | ||||||||||||||| ||| |||||||||||| |||||| |||||||||||||| |||| | ||||| |
|
|
| T |
12234563 |
atttcctcaaacttggccctattgatcgatgaagaaaaatcaatgccttcaaataaagaatctacctcaatggttgcaacaacaaggaaagacaatgatc |
12234662 |
T |
|
| Q |
119 |
tttttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaact |
214 |
Q |
| |
|
||||||| ||||||| ||| | || |||||||| ||| ||||||||||||| || || ||||| |||||||| || ||||||| ||| ||| | |
|
|
| T |
12234663 |
tttttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagtt |
12234762 |
T |
|
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatca |
314 |
Q |
| |
|
|||||||| |||||||||||||||| || ||||| |||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||||||| |
|
|
| T |
12234763 |
taccattctgttatcaaagtcctctcccccgaggtgagtgtttccggctgtggctttaacttggaagacattacctttgattgttaggagagacacatca |
12234862 |
T |
|
| Q |
315 |
aaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
||||||||||| || |||||||| |
|
|
| T |
12234863 |
aaagtgccaccgccgagatcaaa |
12234885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 21 - 340
Target Start/End: Original strand, 11999283 - 11999593
Alignment:
| Q |
21 |
ttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatctt |
120 |
Q |
| |
|
|||||||||||| || |||||||| || | ||||||||||||||| | | |||||||||||| |||||||||||||||||||||| | || ||| |||| |
|
|
| T |
11999283 |
ttcctcaaactttgcccgattgatggatgaagaaaaatcaatgccttgaaataaagaatctacctcaatagttgcaacaacaagaaatgatagtattctt |
11999382 |
T |
|
| Q |
121 |
tttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactca |
216 |
Q |
| |
|
||||| ||||||| ||| |||| |||||||| ||| ||| | ||||||| ||||| |||| ||||||| |||| ||||||| ||||||||| |
|
|
| T |
11999383 |
tttgccctctcacaagcagttctcaacctcctcaaggcttttgaacttccactaatatccacttcgttctttatcttgaactcttgtacaaagta----- |
11999477 |
T |
|
| Q |
217 |
ccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaa |
316 |
Q |
| |
|
|||||||| ||||||| ||| | ||| |||||||||||||| ||||||||||| |||||||| |||||||| ||||||| ||||| |||||| |
|
|
| T |
11999478 |
--------ttatcaaaatcctctcctccgaagtgagtgtttccagctgtggccttaacttggaagacattgtccttaattgttagtatagacaaatcaaa |
11999569 |
T |
|
| Q |
317 |
agtgccaccaccaagatcaaagac |
340 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
11999570 |
agtgccaccgccaagatcaaagac |
11999593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 14703282 - 14703608
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatc |
118 |
Q |
| |
|
||||| ||||||||||| | |||||| || | |||||| ||||||| | | |||||| ||||| ||||||||| || ||||| | ||||||||| || |
|
|
| T |
14703282 |
atttcttcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaatagtggcgacaacttggaaagaaagtgttc |
14703381 |
T |
|
| Q |
119 |
tttttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaact |
214 |
Q |
| |
|
||||||| ||||| | ||| |||| ||||| || ||| ||||||||||||| || || | | |||| |||||||| ||||||| |||||||| | |
|
|
| T |
14703382 |
tttttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactcttgaacaaagtagtt |
14703481 |
T |
|
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatca |
314 |
Q |
| |
|
||||||||| ||||| |||||||||| || ||||| ||||||||||| |||||||||| ||| ||||| | ||||||| ||||| |||||||| ||| |
|
|
| T |
14703482 |
caccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagccttaatttggaagacggtgcccttaattgttaggagagacacgtca |
14703581 |
T |
|
| Q |
315 |
aaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
14703582 |
aaagtaccaccaccaagatcaaagaca |
14703608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 16662162 - 16661960
Alignment:
| Q |
139 |
tcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctc |
238 |
Q |
| |
|
|||| |||||||| ||||||||||| | | | ||||| ||||||||||| || || || |||| |||||||| ||| |||||| |||||||||||||| |
|
|
| T |
16662162 |
tcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctc |
16662063 |
T |
|
| Q |
239 |
tcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaag |
338 |
Q |
| |
|
|| || ||||| |||||||||| || || ||||||| |||||||| | | ||||| || || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
16662062 |
tcccccgaggtgagtgtttccagaagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaag |
16661963 |
T |
|
| Q |
339 |
aca |
341 |
Q |
| |
|
||| |
|
|
| T |
16661962 |
aca |
16661960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 339
Target Start/End: Original strand, 43625424 - 43625610
Alignment:
| Q |
153 |
gctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcg |
252 |
Q |
| |
|
||||||| |||||| | ||||| || |||||||| ||| || |||||| ||||||| |||||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
43625424 |
gctcttgagtttccaataatatccacattgttcttcttctcaaattcttctgcaaagtagttcaccattctatcatcaaagtcctctcctccaaggtgag |
43625523 |
T |
|
| Q |
253 |
tgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
|||||||||| || || ||||| | ||||| || |||||||| || |||| ||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
43625524 |
tgtttccagcagtggctttaacacggaagaccttgtccttaattgtaagtatagacacatcaaaagtaccaccaccaaggtcaaaga |
43625610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 16657811 - 16657485
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatc |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||||| ||||| || | | |||||||||||| ||||| ||| | |||| | | |||| |||| | |
|
|
| T |
16657811 |
atttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctcaacagtggtgacaaaagcaaaagagagtgtcc |
16657712 |
T |
|
| Q |
119 |
tttttgcactctcact----gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaact |
214 |
Q |
| |
|
| ||||| ||||||| ||| |||| |||||||| ||||||| || |||||||| || || || ||||| | | ||||| ||||||||||| | |
|
|
| T |
16657711 |
tctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttattcttcttttgaaactcctctacaaagtagtt |
16657612 |
T |
|
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatca |
314 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||| |||||||| || || || || || | ||| |||| | ||||||| || || | |||||||||| |
|
|
| T |
16657611 |
caccgttctgttatcaaagtcctctcccccaaggtgagtgtttccggcagtggcttttacctcaaaaacatcacccttaattgtaaggatagacacatca |
16657512 |
T |
|
| Q |
315 |
aaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||||| ||||| ||||| ||||||||| |
|
|
| T |
16657511 |
aaagtaccaccgccaaggtcaaagaca |
16657485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 17718080 - 17717979
Alignment:
| Q |
180 |
ttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaa |
279 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||| |||| ||| ||||| | |||||| || | || ||| |||||||| ||||| |||| |
|
|
| T |
17718080 |
ttgttctttctcttgaactcttgaacaaagtggttcaccattctgttattaaaatcctcacctccaagatgggcgtctccggctgtagctttaacctgaa |
17717981 |
T |
|
| Q |
280 |
ag |
281 |
Q |
| |
|
|| |
|
|
| T |
17717980 |
ag |
17717979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 35132326 - 35132648
Alignment:
| Q |
14 |
catttatttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaag |
113 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| | ||||||||||||||| | | |||||||||||| |||||| | ||||||||||| ||||||| |
|
|
| T |
35132326 |
cattcatttcctcaaacttggcgcgattgattgatgaagaaaaatcaatgccttgaaataaagaatctacttcaatattggcaacaacaaggaaagaaag |
35132425 |
T |
|
| Q |
114 |
tgatctttttgcactctcactgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaac |
213 |
Q |
| |
|
|||||| ||||| |||| | | || | ||||| ||| ||| ||| ||||| || |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
35132426 |
tgatctctttgccctctagcagg---cagtt--ctcaaggcttttgaattcccactaatgtctactttgttctttctcttgaactcttgtacaaagtagt |
35132520 |
T |
|
| Q |
214 |
tcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatc |
313 |
Q |
| |
|
|||||||||| |||||||||||||||| || || || |||||||| || || ||||||||||| ||||||||||||||||| || |||| || ||||| |
|
|
| T |
35132521 |
tcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagtggccttaacttggaagacattatccttaatagtaagtattgaaacatc |
35132620 |
T |
|
| Q |
314 |
aaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||||||||||||||||||||| |||||| |
|
|
| T |
35132621 |
aaaagtgccaccaccaagatcgaagaca |
35132648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 147 - 341
Target Start/End: Original strand, 30775258 - 30775452
Alignment:
| Q |
147 |
ctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaa |
246 |
Q |
| |
|
||||||||||||||||| || | || || || |||||||| |||| || || |||||||||||| ||| |||||| |||||||||||||||| || | |
|
|
| T |
30775258 |
ctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattcctctacaaagtaattcaacattctgttatcaaagtcctctcccccga |
30775357 |
T |
|
| Q |
247 |
ggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||| ||||||||||| || || ||||||| ||| |||| ||| ||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30775358 |
tgtgagtgtttccagcagttgctttaacttcaaacacatcatctctaatggtgagaagagacacatcaaaagtcccaccaccaagatcaaagaca |
30775452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 341
Target Start/End: Complemental strand, 9336008 - 9335859
Alignment:
| Q |
192 |
tttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatcct |
291 |
Q |
| |
|
||||||||||| ||||| || | |||||||| |||||||||||||| | |||||||||||||||||| || || || || |||| ||| | || | ||| |
|
|
| T |
9336008 |
tttaactcttccacaaaatagttaaccattctgttatcaaagtcctcgcctccaaggtgcgtgtttcctgcggtggcttttacttcaaatagatcaccct |
9335909 |
T |
|
| Q |
292 |
taatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
|||| || || | ||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
9335908 |
taattgtgaggatagacacatcaaaagtaccgccacccagatcaaagaca |
9335859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 15595032 - 15595234
Alignment:
| Q |
139 |
tcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctc |
238 |
Q |
| |
|
||||||||||||| || ||||| || ||| | ||||| ||||||||||| |||| || || | ||||||| | |||||||| |||||||||||||| |
|
|
| T |
15595032 |
tcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattcctgcgcaaagtagttgaccattctgttatcaaagtcctc |
15595131 |
T |
|
| Q |
239 |
tcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaag |
338 |
Q |
| |
|
|| ||||||||| |||||||| |||| ||||||||||| ||||| || |||||||| ||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
15595132 |
tcctccaaggtgagtgtttccgcctgtggccttaacttggaagaccttgtccttaattgttaggatagacacatcaaaagtgccaccaccaagatcaaag |
15595231 |
T |
|
| Q |
339 |
aca |
341 |
Q |
| |
|
||| |
|
|
| T |
15595232 |
aca |
15595234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 139 - 340
Target Start/End: Complemental strand, 34466963 - 34466762
Alignment:
| Q |
139 |
tcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctc |
238 |
Q |
| |
|
|||| |||||||||||||| || |||||||| ||||| || | ||| ||||| ||||| | | |||||| || |||||||||||||||||||||| |
|
|
| T |
34466963 |
tcaacctcctcaaagctctagggtttccactaatatccttattatgcttcctcttgaactcctttgcaaagtggttcgccattctattatcaaagtcctc |
34466864 |
T |
|
| Q |
239 |
tcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaag |
338 |
Q |
| |
|
|| ||| ||||| ||||| |||| || |||||||||| |||||||||||||||||| || || ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
34466863 |
tcgtccgaggtgagtgttaccagaagtggccttaacttcaaagacattatccttaattgtaaggagagacacatcaaaagtcccaccaccaaggtcaaag |
34466764 |
T |
|
| Q |
339 |
ac |
340 |
Q |
| |
|
|| |
|
|
| T |
34466763 |
ac |
34466762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 341
Target Start/End: Complemental strand, 4678672 - 4678526
Alignment:
| Q |
195 |
aactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaa |
294 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||||||||||||| || ||||| ||||||||||| || || || |||| ||||||| | |||| | |
|
|
| T |
4678672 |
aactcctctacaaagtagttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggcttttacttcaaagacaccacccttga |
4678573 |
T |
|
| Q |
295 |
tggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
| | || | ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
4678572 |
ttttaaggatagacacatcaaaagtaccaccaccaaggtcaaagaca |
4678526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 27)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 337
Target Start/End: Complemental strand, 27831040 - 27830847
Alignment:
| Q |
144 |
ctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttc |
243 |
Q |
| |
|
|||||||| |||||||| || ||||| || || ||| | ||||| |||| ||| | || ||||| || ||||||| ||||||||||||||||||| | |
|
|
| T |
27831040 |
ctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcctattatcaaagtcctctccac |
27830941 |
T |
|
| Q |
244 |
caaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| || | ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
27830940 |
caaggtgagtgtttccagcagttgccttaacttggaagaccttatccttaattgtaacaagagacacatcaaaagtcccaccaccaaggtcaaa |
27830847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 135 - 328
Target Start/End: Original strand, 3147258 - 3147451
Alignment:
| Q |
135 |
gttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagt |
234 |
Q |
| |
|
|||||||| ||||| || ||||||| || |||| || ||||| |||||||| |||| ||||| | ||||||| ||||||| ||||||||||||| |
|
|
| T |
3147258 |
gttttcaacctccttaaggctcttgagttctcactaatgtctaccttgttcttcttcttaaactcccgtgcaaagtagttcaccatcctattatcaaagt |
3147357 |
T |
|
| Q |
235 |
cctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccacc |
328 |
Q |
| |
|
|||||| |||||||| |||||||| || | ||||||||||||||||| ||||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
3147358 |
cctctcccccaaggtgggtgtttcctgcgatggccttaacttgaaagaccttatccttaattgtaagaagagacacatcaaaagtcccaccacc |
3147451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 215 - 331
Target Start/End: Original strand, 8646951 - 8647067
Alignment:
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatca |
314 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||| ||||||||||| || || ||||| |||||||| ||||||||||| || || |||||||||||| |
|
|
| T |
8646951 |
caccattctactatcaaagtcctctcctccgaggtgagtgtttccagcggtggctttaacatgaaagaccttatccttaattgtaaggagagacacatca |
8647050 |
T |
|
| Q |
315 |
aaagtgccaccaccaag |
331 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
8647051 |
aaagttccaccaccaag |
8647067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 146 - 337
Target Start/End: Complemental strand, 8585869 - 8585678
Alignment:
| Q |
146 |
cctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttcca |
245 |
Q |
| |
|
||||||||||||||| || | | ||||| || |||||||||||||| || || || |||||||| ||| |||||| |||||||||||| ||| ||| |
|
|
| T |
8585869 |
cctcaaagctcttgggttcttagtaatatccacattgttctttctcttaaattcctcaacaaagtagttcaacattctgttatcaaagtcccctccccca |
8585770 |
T |
|
| Q |
246 |
aggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
||||| || |||||||| || || ||||||| |||||||| | | ||||| || || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8585769 |
aggtgagtatttccagcggttgctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaa |
8585678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 340
Target Start/End: Original strand, 1301514 - 1301659
Alignment:
| Q |
195 |
aactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaa |
294 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| || |||||| | || || || |||| |||||||| |||| | |
|
|
| T |
1301514 |
aactcctctacaaagtagctcaccattctattatcaaagtcctctcctccaaggtgagtatttccaccagtggcttttacttcaaagacatcgcccttga |
1301613 |
T |
|
| Q |
295 |
tggttagtagagacacatcaaaagtgccaccaccaagatcaaagac |
340 |
Q |
| |
|
|||| || | ||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
1301614 |
tggtaaggatagacacatcaaaagtaccaccgccaaggtcaaagac |
1301659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 195 - 340
Target Start/End: Original strand, 8659417 - 8659562
Alignment:
| Q |
195 |
aactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaa |
294 |
Q |
| |
|
||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||| || || || |||| |||||||| | |||| | |
|
|
| T |
8659417 |
aactcctctacaaagtagttcaccattctgctatcaaagtcctctcctccaaggtgagtgtttccagaagtggcttttacttcaaagacatcacccttca |
8659516 |
T |
|
| Q |
295 |
tggttagtagagacacatcaaaagtgccaccaccaagatcaaagac |
340 |
Q |
| |
|
| || || | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8659517 |
ttgtaaggatagacacatcaaaagtaccaccaccaagatcaaagac |
8659562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 162 - 340
Target Start/End: Original strand, 6789533 - 6789711
Alignment:
| Q |
162 |
tttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccag |
261 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||| ||||| ||| ||||||| | |||| || |||||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
6789533 |
tttccagtaatatccactttgttcttcctcttaaactcctctgcaaagtagtttaccaatcggttatcaaagtcctctcctccgaggtgagtgtttccac |
6789632 |
T |
|
| Q |
262 |
ctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaagac |
340 |
Q |
| |
|
| || ||||||||||| ||||| ||||| || || |||| | ||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
6789633 |
cggtggccttaacttggaagaccttatctttgattgttaagatagacacatcgaaagtgccaccaccaaggtcgaagac |
6789711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 8654504 - 8654646
Alignment:
| Q |
195 |
aactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaa |
294 |
Q |
| |
|
||||| ||||||||||| ||||||||| ||||||||||| |||| || ||||||||||||||||| || || || || | |||||||| | |||||| |
|
|
| T |
8654504 |
aactcctctacaaagtagtacaccattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggcttttacgtcaaagacatcacccttaa |
8654603 |
T |
|
| Q |
295 |
tggttagtagagacacatcaaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
| || |||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
8654604 |
ttgtgagtatagacacatcaaaagtaccaccaccaagatcaaa |
8654646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 179 - 339
Target Start/End: Original strand, 8559371 - 8559531
Alignment:
| Q |
179 |
tttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttga |
278 |
Q |
| |
|
||||||||| |||| ||||||| |||||||| |||||||||| |||||||||||||||| ||| ||||| |||| ||| | || ||||| |||| | |
|
|
| T |
8559371 |
tttgttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcctccgaggtgtgtgtctccggaagtggccttgacttca |
8559470 |
T |
|
| Q |
279 |
aagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
|||| ||||| |||||| || || ||||| ||||||||||| |||||||| |||||||||| |
|
|
| T |
8559471 |
aagagattattcttaattgtgagaagagaaacatcaaaagttccaccaccgagatcaaaga |
8559531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 8628609 - 8628728
Alignment:
| Q |
218 |
cattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaa |
317 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| || |||||||| || || ||||||| |||||||| | | ||||| || || ||||||||||||||| |
|
|
| T |
8628609 |
cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaaa |
8628708 |
T |
|
| Q |
318 |
gtgccaccaccaagatcaaa |
337 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
8628709 |
gtcccaccaccaagatcaaa |
8628728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 341
Target Start/End: Original strand, 17268014 - 17268139
Alignment:
| Q |
216 |
accattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaa |
315 |
Q |
| |
|
||||||||||||||||||||||| | ||||| || |||| |||| | || |||||||||| ||||| ||||||||||| || | ||||||||||||| |
|
|
| T |
17268014 |
accattctattatcaaagtcctcacccccaagatgagtgtctccaccggtggccttaacttcgaagaccttatccttaattgtaacgagagacacatcaa |
17268113 |
T |
|
| Q |
316 |
aagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
|||| ||||||||||| ||||||||| |
|
|
| T |
17268114 |
aagtcccaccaccaaggtcaaagaca |
17268139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 8602047 - 8602170
Alignment:
| Q |
214 |
tcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatc |
313 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||| ||| | || ||||| |||| ||||| ||||| |||||| || || ||||| ||||| |
|
|
| T |
8602047 |
tcaccattcggttatcaaagtcctctcctccaaggtgtgtgtctccggaagtggccttgacttcaaagagattattcttaattgtgagaagagaaacatc |
8602146 |
T |
|
| Q |
314 |
aaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
8602147 |
aaaagttccaccaccaagatcaaa |
8602170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 341
Target Start/End: Complemental strand, 10494488 - 10494342
Alignment:
| Q |
195 |
aactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaa |
294 |
Q |
| |
|
||||| || ||||| ||| |||||||||| ||||| |||||||||| |||||||| ||||| || || || || || |||| |||||||| | |||||| |
|
|
| T |
10494488 |
aactcctcaacaaaataattcaccattctgttatcgaagtcctctcccccaaggtgagtgttacctgcagtggcttttacttcaaagacatcacccttaa |
10494389 |
T |
|
| Q |
295 |
tggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
| || || | ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
10494388 |
ttgtgaggatagacacatcaaaagtaccaccacccagatcaaagaca |
10494342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 17260315 - 17260441
Alignment:
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatca |
314 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| || |||| |||| | || |||||||||| ||||| ||||||||||| || | |||||||||||| |
|
|
| T |
17260315 |
caccattctattatcaaagtcctcacccccaagatgagtgtctccaccggtggccttaacttcgaagaccttatccttaattgtaacgagagacacatca |
17260414 |
T |
|
| Q |
315 |
aaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
||||| || |||||||| ||||||||| |
|
|
| T |
17260415 |
aaagtccccccaccaaggtcaaagaca |
17260441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 339
Target Start/End: Complemental strand, 29577801 - 29577642
Alignment:
| Q |
180 |
ttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaa |
279 |
Q |
| |
|
|||||||| ||||| ||||| | ||||||| ||||||||| ||||||| |||||||||| ||| ||||| || | ||||| || ||||| |||| || |
|
|
| T |
29577801 |
ttgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcctttacttcaa |
29577702 |
T |
|
| Q |
280 |
agacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
| || |||||||| || || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
29577701 |
aactatcatccttaagtgtgagaagagacacatcaaaggtgccaccaccaagatcaaaga |
29577642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 339
Target Start/End: Complemental strand, 29581970 - 29581811
Alignment:
| Q |
180 |
ttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaa |
279 |
Q |
| |
|
|||||||| ||||| ||||| | |||||||| ||||||||| |||||||||||||||| ||| ||||| || | ||||| || ||||| |||| || |
|
|
| T |
29581970 |
ttgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagtcctctcctcctaggtgagtatcgccagcagtggccttcacttcaa |
29581871 |
T |
|
| Q |
280 |
agacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
| || |||||| | || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29581870 |
acttatcatccttgagtgtgagaagagacacatcaaaagtgccaccaccaagatcaaaga |
29581811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 341
Target Start/End: Original strand, 8667470 - 8667619
Alignment:
| Q |
192 |
tttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatcct |
291 |
Q |
| |
|
|||||||| || ||||| || |||||||||| ||||| |||||||| | |||||||| |||||||| || || || || |||| |||||||| | ||| |
|
|
| T |
8667470 |
tttaactcctcaacaaaatagttcaccattctgttatcgaagtcctcgcccccaaggtgagtgtttcctgcagtggctttcacttcaaagacatcaccct |
8667569 |
T |
|
| Q |
292 |
taatggttagtagagacacatcaaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
|||| || || | ||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
8667570 |
taattgtgaggatagacacatcaaaagtcccgccacccagatcaaagaca |
8667619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 13333551 - 13333424
Alignment:
| Q |
214 |
tcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatc |
313 |
Q |
| |
|
|||||||||| ||||| ||||| |||| |||||||| |||||||| || || || || |||| |||||||| | || |||| || || | ||||||||| |
|
|
| T |
13333551 |
tcaccattctgttatcgaagtcttctcccccaaggtgagtgtttcctgcggtggcttttacttcaaagacatcacccataattgtaaggatagacacatc |
13333452 |
T |
|
| Q |
314 |
aaaagtgccaccaccaagatcaaagaca |
341 |
Q |
| |
|
|||||| |||||||| |||||||||||| |
|
|
| T |
13333451 |
aaaagtaccaccacccagatcaaagaca |
13333424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 8382996 - 8382846
Alignment:
| Q |
189 |
ctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattat |
288 |
Q |
| |
|
||||| ||||| || |||||||| |||| ||||| ||||| ||||| || | ||| || || |||| ||| || || ||||| || ||||||||||| |
|
|
| T |
8382996 |
ctcttgaactcgtcaacaaagtacttcacgattctgttatctaagtcttcacctcctagatgagtgtctccggcagtggccttcacaacaaagacattat |
8382897 |
T |
|
| Q |
289 |
ccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
|||||| || || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8382896 |
tcttaattgtgaggagagacacatcaaaagttccaccaccaagatcaaaga |
8382846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 339
Target Start/End: Original strand, 8538040 - 8538234
Alignment:
| Q |
145 |
tcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttcc |
244 |
Q |
| |
|
|||||| |||| ||| ||||||||| || || |||||||| || ||||| || || | ||||| | | |||||| | ||||||||||||||||| ||| |
|
|
| T |
8538040 |
tcctcagagcttttgaatttccactaatgtcaactttgtttttcctcttcaattcattcacaaaatgattcaccaaccgattatcaaagtcctctcctcc |
8538139 |
T |
|
| Q |
245 |
aaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
|||||| || | ||| || || ||||| ||| |||| |||||| ||| | || || ||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
8538140 |
aaggtgagtatctccggcagtggccttgactgtaaaggcattattcttcaatgtaaggagagatacatcaaaagttccaccaccaagatcaaaga |
8538234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 339
Target Start/End: Original strand, 8545672 - 8545831
Alignment:
| Q |
180 |
ttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaa |
279 |
Q |
| |
|
|||||||| ||||| ||||| | ||||||||| |||||||||| ||||||||||| || | || |||| |||| |||||| || ||||| || | || |
|
|
| T |
8545672 |
ttgttcttcctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaagtgtctccagcagtggccttgacatcaa |
8545771 |
T |
|
| Q |
280 |
agacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
|||| |||| ||||| || || | ||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8545772 |
agaccttatttttaattgtaagaatagacacatcaaaagttccaccgccaaggtcaaaga |
8545831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 8636478 - 8636315
Alignment:
| Q |
174 |
tctactttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaa |
273 |
Q |
| |
|
||||| |||||||| ||||| | || |||||||| || ||||||||| |||||||||||||||| ||||||||| |||| ||| || || || |||| |
|
|
| T |
8636478 |
tctaccttgttcttcctcttgatttcctctacaaaatattccaccattctgttatcaaagtcctctcctccaaggtgtgtgtctccggcagtggctttaa |
8636379 |
T |
|
| Q |
274 |
cttgaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
||| |||||| | | | ||||| | |||| |||||| || || || ||||||||||||||||| |
|
|
| T |
8636378 |
cttcaaagacttcacctttaattttgagtatagacacgtcgaatgtaccaccaccaagatcaaa |
8636315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 8590800 - 8590836
Alignment:
| Q |
303 |
agagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590800 |
agagacacatcaaaagtgccaccaccaagatcaaaga |
8590836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 17267813 - 17267855
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaa |
61 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
17267813 |
atttcctcaaacttggcacgagtgattgacgaagaaaaatcaa |
17267855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 8616555 - 8616628
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagt |
92 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | ||| ||||| ||||| ||||||||| |||| ||||||||||| |
|
|
| T |
8616555 |
atttcctcaaacttaacacgagtgattgatgaagagaaatcgatgccctcacataaataatcaatctcaatagt |
8616628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 8581763 - 8581898
Alignment:
| Q |
204 |
acaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagta |
303 |
Q |
| |
|
||||||| | |||||||||| |||||||| || || | ||| ||||| |||| |||||| || ||||| |||| | || | |||| ||||| || || | |
|
|
| T |
8581763 |
acaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagtggccttgacttcatagtcgttattcttaactgtgagaa |
8581862 |
T |
|
| Q |
304 |
gagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8581863 |
tagacacatcaaaagttccacctccaaggtcaaaga |
8581898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Complemental strand, 7877739 - 7877706
Alignment:
| Q |
303 |
agagacacatcaaaagtgccaccaccaagatcaa |
336 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
7877739 |
agagacacatcgaaagtgccaccaccaagatcaa |
7877706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 337
Target Start/End: Original strand, 12528540 - 12528700
Alignment:
| Q |
177 |
actttgttctttctctttaactcttctacaaagtaactcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaactt |
276 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||| | ||||||||| ||||||||||||||||| ||||||||| |||| ||| || || ||||| |||| |
|
|
| T |
12528540 |
actttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagtggccttgactt |
12528639 |
T |
|
| Q |
277 |
gaaagacattatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaa |
337 |
Q |
| |
|
|||||||||| ||| | || || ||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
12528640 |
cgaagacattattctttactgtaagaagagacacatcaaaagttccaccgccaaggtcaaa |
12528700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 43744690 - 43744936
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatc |
118 |
Q |
| |
|
|||||||||||||| | |||| |||||| | | | ||||||||||| ||| |||||||||||| ||||||||| | |||||| | |||| | || | |
|
|
| T |
43744690 |
atttcctcaaacttagtacgagtgattgttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagataatgtcc |
43744789 |
T |
|
| Q |
119 |
tttttgcactctcac----tgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaact |
214 |
Q |
| |
|
||||||| || || | |||| |||| ||||| || |||||||| |||||| | || || || |||||||| |||| ||||| ||| | ||||| | |
|
|
| T |
43744790 |
tttttgctctttcgcatgctgttctcaacctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagtt |
43744889 |
T |
|
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccag |
261 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||| ||||| |||||||||| |
|
|
| T |
43744890 |
caccatcctattatcaaaatcctctcctccgaggtgagtgtttccag |
43744936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 339
Target Start/End: Original strand, 43744993 - 43745047
Alignment:
| Q |
285 |
ttatccttaatggttagtagagacacatcaaaagtgccaccaccaagatcaaaga |
339 |
Q |
| |
|
||||||||||| || || ||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
43744993 |
ttatccttaattgtaaggagagacacatcaaaagtcccaccacccaggtcaaaga |
43745047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 28219792 - 28220069
Alignment:
| Q |
19 |
atttcctcaaacttggcacgattgattgacgcagaaaaatcaatgccatcacataaagaatctatctcaatagttgcaacaacaagataagaaagtgatc |
118 |
Q |
| |
|
|||||||||||||| |||||| | ||||| | | | ||||||||||| ||| |||||||||||| |||||| || || |||||| | |||| |||| | |
|
|
| T |
28219792 |
atttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaagaatctacctcaatggtggcgacaacagcaaaagatagtgtcc |
28219891 |
T |
|
| Q |
119 |
tttttgcactct----cactgttttcaatctcctcaaagctcttggatttccacttatatctactttgttctttctctttaactcttctacaaagtaact |
214 |
Q |
| |
|
||||||| |||| | ||||| |||| ||||| || ||||||| |||||| | || || || |||||||| |||| ||||| ||| | ||||| | |
|
|
| T |
28219892 |
tttttgctctcttgcacgctgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaagtagtt |
28219991 |
T |
|
| Q |
215 |
caccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatcctt |
292 |
Q |
| |
|
|||||| ||| ||||||||||||||| || ||||| ||||||||||| || ||||| ||||| ||||| |||||||| |
|
|
| T |
28219992 |
caccatcctactatcaaagtcctctcccccgaggtgagtgtttccagcggtggccttcacttggaagaccttatcctt |
28220069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 324
Target Start/End: Original strand, 28910655 - 28910765
Alignment:
| Q |
214 |
tcaccattctattatcaaagtcctctcttccaaggtgcgtgtttccagctgtagccttaacttgaaagacattatccttaatggttagtagagacacatc |
313 |
Q |
| |
|
||||||| |||||||||| |||||| || ||||| ||||||||||| || ||||||||||| ||||| ||||||| ||| || || ||||| ||||| |
|
|
| T |
28910655 |
tcaccatcctattatcaatgtcctcgaccccgaggtgagtgtttccagcggtggccttaacttggaagaccttatcctgaattgtaaggagagaaacatc |
28910754 |
T |
|
| Q |
314 |
aaaagtgccac |
324 |
Q |
| |
|
|||||| |||| |
|
|
| T |
28910755 |
aaaagtcccac |
28910765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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