View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20150_high_7 (Length: 301)

Name: NF20150_high_7
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20150_high_7
NF20150_high_7
[»] chr3 (2 HSPs)
chr3 (208-290)||(39484452-39484534)
chr3 (1-53)||(39484245-39484297)
[»] chr2 (1 HSPs)
chr2 (214-289)||(38955121-38955196)
[»] chr1 (1 HSPs)
chr1 (214-289)||(22964721-22964796)
[»] chr8 (1 HSPs)
chr8 (209-273)||(38442253-38442317)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 39484452 - 39484534
Alignment:
Q  208 cgctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttctt 290  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484452 cgctggccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttctt 39484534  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 39484245 - 39484297
Alignment:
Q  1 taattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagct 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39484245 taattaaagtttcaacaattgacatcgacatatcacaaacaacacacatagct 39484297  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 214 - 289
Target Start/End: Original strand, 38955121 - 38955196
Alignment:
Q  214 ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttct 289  Q
    ||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||| ||||    
T  38955121 ccttctttacccatcctcctcctagcctgcgtttatacacaacacttcaacccaccaccaccatcaacttttttct 38955196  T

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Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 214 - 289
Target Start/End: Complemental strand, 22964796 - 22964721
Alignment:
Q  214 ccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccaccaccatcagctttgttct 289  Q
    ||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||| ||||    
T  22964796 ccttctttacccaccctcctcctagcctgcgtttctacacaacacttcaacccaccaccaccatcaacttttttct 22964721  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 273
Target Start/End: Original strand, 38442253 - 38442317
Alignment:
Q  209 gctgaccttctttacctatcctcctcctagcatgcgtttctacacgacacttcaacccaccacca 273  Q
    |||| |||| ||||||||||||||||||| | |||| |||| |||  ||||||||||||||||||    
T  38442253 gctggccttttttacctatcctcctcctaccctgcgcttctgcacaccacttcaacccaccacca 38442317  T

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