View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_high_8 (Length: 298)
Name: NF20150_high_8
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_high_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 38421768 - 38421484
Alignment:
| Q |
10 |
caagaatatagaaatggtacaaaaatgaatgcacagatcatatgtgcattttcccagttgacattattattatcacgaggaaactagaaagtatattaat |
109 |
Q |
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| T |
38421768 |
caagaaaatagaaatggtacaaaaatgaatgcacagatcatatgtgcattttcccagttgacattattattatcacgaggaaactagaaagtatattaat |
38421669 |
T |
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| Q |
110 |
agtaacaatacaaaaagcctgaggtcaatagatttggtttggtgccaagtttttacataaatcaatgaaactgaggttgacatcgatcaaatcatcaaat |
209 |
Q |
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| T |
38421668 |
agtaacaatacaaaaagcctgaggtcaatagatttggtttggtgccaagtttttacataaatcaatgagactgaggttgacatcgattaaatcatcaaat |
38421569 |
T |
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| Q |
210 |
gtcaatcggaagtaatacaaaataacaatttcagggcaagttttaattaaacaaggaaggagtaaatcaaaggataaaacaccgattga |
298 |
Q |
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| T |
38421568 |
gtcaatcggaagtaatacaaaataacaatttcagggcaagtt----ttaaacaatgaaggagtaaatcaaaggataaaacaccgattga |
38421484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 38413713 - 38413518
Alignment:
| Q |
75 |
attattatcacgaggaaactagaaagtatattaatagtaacaatacaaaaagcctgaggtcaatagatttggtttggtgccaagttttt-acataaatca |
173 |
Q |
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| T |
38413713 |
attatcatcatgaggaaactagaaaggatactaataataacaatacaaaaagcccaagatcaatagatttggtt------caagatttggacataaatcg |
38413620 |
T |
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| Q |
174 |
atgaaactgaggttgacatcgatcaaatcatcaaatgtcaatcggaagtaatacaaaataacaatttcagggcaagttttaattaaacaaggaaggagta |
273 |
Q |
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| T |
38413619 |
atgagactgagattgacattgatcaaatcatcaaatgtcaattggaagtaatacaaaataacaatttcggggcaagttcta---aaacaaggaaagagtc |
38413523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 38414631 - 38414574
Alignment:
| Q |
23 |
atggtacaaaaatgaatgcacagatcatatgtgcattttcccagttgacattattatt |
80 |
Q |
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| T |
38414631 |
atggttcaaaaaataatgcacagatcagatgtgcattttcccagctgacattgttatt |
38414574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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