View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20150_high_9 (Length: 277)

Name: NF20150_high_9
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20150_high_9
NF20150_high_9
[»] chr4 (3 HSPs)
chr4 (16-261)||(32521190-32521437)
chr4 (120-166)||(53967226-53967272)
chr4 (126-166)||(17766879-17766919)
[»] chr7 (3 HSPs)
chr7 (124-261)||(21833936-21834071)
chr7 (139-187)||(4610362-4610410)
chr7 (169-263)||(29051367-29051458)
[»] chr3 (3 HSPs)
chr3 (136-257)||(8004824-8004945)
chr3 (122-166)||(14827252-14827296)
chr3 (125-187)||(32210773-32210835)
[»] chr1 (2 HSPs)
chr1 (179-261)||(32979621-32979703)
chr1 (179-261)||(24814685-24814767)
[»] chr2 (1 HSPs)
chr2 (181-254)||(40186532-40186605)
[»] chr8 (1 HSPs)
chr8 (184-232)||(44340520-44340568)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 261
Target Start/End: Complemental strand, 32521437 - 32521190
Alignment:
Q  16 ctacttatatctccagaagttataggtcctttttgcacgccttctaatttgacaattttacttcgattggattttgtagtccaaaatgcatttgatattt 115  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | || ||||||||||||||    
T  32521437 ctacttatacctccataagttataggtccttttcgcacgccttctaatttgacaattttacttcgattgaattttgtagttcgaagtgcatttgatattt 32521338  T
Q  116 ttt--aacccagttttgttcagattcaactaaatttattaaaatgacataattgtaaatgttattatttaaaattgacaacaaaatttgataatccatca 213  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32521337 tttttaacccagttttgttcagattcaactaaatttattaaaatgacataattgtaaatgttattatttaaaattgacaacaaaatttgataatccatca 32521238  T
Q  214 tgtattattaattaaacatgatttcataaaacatttatattaacataa 261  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||    
T  32521237 cgtattattaattaaacatgatttcataaaacatttgtattaacataa 32521190  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 53967272 - 53967226
Alignment:
Q  120 acccagttttgttcagattcaactaaatttattaaaatgacataatt 166  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||    
T  53967272 acccaattatgttcagattcaactcaatttattaaaatgacataatt 53967226  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 17766919 - 17766879
Alignment:
Q  126 ttttgttcagattcaactaaatttattaaaatgacataatt 166  Q
    ||||| |||| ||||||| ||||||||||||||||||||||    
T  17766919 ttttgctcaggttcaactcaatttattaaaatgacataatt 17766879  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 124 - 261
Target Start/End: Original strand, 21833936 - 21834071
Alignment:
Q  124 agttttgttcagattcaactaaatttattaaaatgacataattgtaaatgttattatttaaaattgacaacaaaatttgataatccatcatgtattatta 223  Q
    ||||||||||| |||||| | |||||||||||||||| ||||||||||||  ||  |||||||||||||| ||||||| ||||| |||||  | ||||||    
T  21833936 agttttgttcaaattcaattcaatttattaaaatgacttaattgtaaatgacat--tttaaaattgacaagaaaatttaataattcatcacattttatta 21834033  T
Q  224 attaaacatgatttcataaaacatttatattaacataa 261  Q
    ||| || ||  |||||||| |||||||| |||||||||    
T  21834034 attgaatatattttcataatacatttatgttaacataa 21834071  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 4610362 - 4610410
Alignment:
Q  139 caactaaatttattaaaatgacataattgtaaatgttattatttaaaat 187  Q
    ||||| ||||||||||||||||||||||||||||| ||| |||||||||    
T  4610362 caactcaatttattaaaatgacataattgtaaatgatataatttaaaat 4610410  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 29051458 - 29051367
Alignment:
Q  169 aaatgttattatttaaaattgacaacaaaatttgataatccatcatgtattattaattaaacatgatttcataaaacatttatattaacataatg 263  Q
    ||||| ||| |||| ||||||| |||||||||| |||||| ||||| |  |||||||| ||||||||||||||| ||||||| ||||| ||||||    
T  29051458 aaatgatataatttgaaattgataacaaaattt-ataatctatcattt--tattaattgaacatgatttcataatacatttacattaatataatg 29051367  T

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Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 8004824 - 8004945
Alignment:
Q  136 attcaactaaatttattaaaatgacataattgtaaatgttattatttaaaattgacaacaaaatttgataatccatcatgtattattaattaaacatgat 235  Q
    |||||||| ||||||||||||| | ||| ||| ||||| || ||||||||| |||||| ||||| | ||||| | |||| | ||||||||| ||||| ||    
T  8004824 attcaactcaatttattaaaataaaatagttgcaaatgatagtatttaaaactgacaataaaatataataattcctcatatcttattaattgaacattat 8004923  T
Q  236 ttcataaaacatttatattaac 257  Q
    ||||||| ||||||||| ||||    
T  8004924 ttcataatacatttataataac 8004945  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 14827252 - 14827296
Alignment:
Q  122 ccagttttgttcagattcaactaaatttattaaaatgacataatt 166  Q
    |||||||||| || |||||||||||||||||||||||||||||||    
T  14827252 ccagttttgtacatattcaactaaatttattaaaatgacataatt 14827296  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 32210835 - 32210773
Alignment:
Q  125 gttttgttcagattcaactaaatttattaaaatgacataattgtaaatgttattatttaaaat 187  Q
    |||||| ||| |||||| | |||||||||||||||||||||||||| ||  || |||||||||    
T  32210835 gttttgatcaaattcaaattaatttattaaaatgacataattgtaagtgacataatttaaaat 32210773  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 261
Target Start/End: Original strand, 32979621 - 32979703
Alignment:
Q  179 atttaaaattgacaacaaaatttgataatccatcatgtattattaattaaacatgatttcataaaacatttatattaacataa 261  Q
    |||||||||| |||||| ||||| ||||| |||||  | |||||| || ||||||||||||||| ||||||  ||||||||||    
T  32979621 atttaaaatttacaacataatttaataattcatcacattttattatttgaacatgatttcataatacatttgcattaacataa 32979703  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 24814767 - 24814685
Alignment:
Q  179 atttaaaattgacaacaaaatttgataatccatcatgtattattaattaaacatgatttcataaaacatttatattaacataa 261  Q
    |||||||| |||||||||||||| |||||  ||||  | ||||| ||| ||||||||| |||||  |||||| ||||||||||    
T  24814767 atttaaaactgacaacaaaatttaataatttatcacattttattgattgaacatgattccataatgcatttacattaacataa 24814685  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 40186605 - 40186532
Alignment:
Q  181 ttaaaattgacaacaaaatttgataatccatcatgtattattaattaaacatgatttcataaaacatttatatt 254  Q
    ||||||||||||||||||||| |||||  || |  | ||||||||| || ||||||||| || |||||||||||    
T  40186605 ttaaaattgacaacaaaatttaataattaataacattttattaattgaaaatgatttcaaaatacatttatatt 40186532  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 44340568 - 44340520
Alignment:
Q  184 aaattgacaacaaaatttgataatccatcatgtattattaattaaacat 232  Q
    |||||||||||||||||| ||||| ||||| || ||||| |||||||||    
T  44340568 aaattgacaacaaaatttaataattcatcacgttttattcattaaacat 44340520  T

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