View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_low_1 (Length: 459)
Name: NF20150_low_1
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Original strand, 7704860 - 7705287
Alignment:
| Q |
16 |
atgaatagagtttaattcattaatgtaatgggatgggtacgttgaattgttgatttaattacggatgtctcatgatcactaagtatcctacgacgatatt |
115 |
Q |
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| T |
7704860 |
atgaatagagtttaattcattaatgtaatgggatgggtacgttgaattgttgatttaattagggatgtctcatgatccctaagtatcctacgacgatatt |
7704959 |
T |
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| Q |
116 |
gttacgaattaggttttgttcattctattcccctgttcaaaggttttagtttcctttcattctatttcatctgaattcgatgatgaattcttttttgaaa |
215 |
Q |
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| T |
7704960 |
gttacgaattaggttttgttcattctattcccctgttcaaaggttttagtttcctttcattctatttcatctgaattcgatgatgaattcttttttgaaa |
7705059 |
T |
|
| Q |
216 |
ttttgcttatctatagttactttgctggacaacatcattgaacattttctcagaactttttacttactgaacagtgccannnnnnnnnnnnnnnngcttt |
315 |
Q |
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| T |
7705060 |
ttttgcttatctatagttactttgctggacaacatcattgaacattttctcagaactttttacttactgaacagtgccattttttttttctttttgcttt |
7705159 |
T |
|
| Q |
316 |
ctttgttatcttt-ggaatttctagcattcttgttgcacacaataaacttcaaaattagttgagattaaacattttagtcaaaacaaattcatagtatga |
414 |
Q |
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| T |
7705160 |
ctttgttatctttaggagtttctagcattcttgttgcacacaataaacttcaaaattagttgagattaaatattttagtcaaaacaaattcatagtatga |
7705259 |
T |
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| Q |
415 |
gcacaagataagcaggaagtaaaatagt |
442 |
Q |
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| T |
7705260 |
gcacaagataagcaggaagtaaaatagt |
7705287 |
T |
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