View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_low_2 (Length: 447)
Name: NF20150_low_2
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 3683363 - 3683022
Alignment:
| Q |
1 |
gatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtggaggctcaagtgagtttgtatgaaaataagaaatcactggact |
100 |
Q |
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| T |
3683363 |
gatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtggaggctcaagtgagtttgtatgaaaataagaaatcactggact |
3683264 |
T |
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| Q |
101 |
ctatttatagtgttcatggtgttggatggttgatgaggtgtgtgtttatatgcccatcattataagtttaaaaatttggttannnnnnnnnnnnnnnnnn |
200 |
Q |
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| T |
3683263 |
ctatttatagtgttcatggtgttggatggttgatgaggtgtgtgtttatatgcccatcattataagtttaataatttggttaatatata----------- |
3683175 |
T |
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| Q |
201 |
ctctaaggtggactcatgactttcatatgttaaggctgagaattttagcactatagcaatactccgtgtgttggaagcttatgatttgtgaagttagatg |
300 |
Q |
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| T |
3683174 |
-tctaaggtggactcatgactttcatatgttaaggctgagaattttagcactatagcaatactccgtgtgttggaagcttatgatttgtgaagttagatg |
3683076 |
T |
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| Q |
301 |
ggacctt--gagagaaatatatggatctactaaatagaaaagtcatatttgtga |
352 |
Q |
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| T |
3683075 |
ggaccttgagagagaaatctatggatctactaaatagaaaagtcatatttgtga |
3683022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 3702147 - 3702005
Alignment:
| Q |
1 |
gatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtggaggctcaagtgagtttgtatgaaaataaga--aatcactgga |
98 |
Q |
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| T |
3702147 |
gatggtagcttgtgtacgtttcttcggttaataactaaacctataattgtaaaagtggaggctcaagtgagtttgtatgaaaataaaaagattaattgta |
3702048 |
T |
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| Q |
99 |
ctctatttatagtgttcatggtgttggatggttgatgaggtgt |
141 |
Q |
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| T |
3702047 |
ctctatttatagtgttcatggtgttgaaaggttaatgaggtgt |
3702005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 343 - 437
Target Start/End: Complemental strand, 3682988 - 3682894
Alignment:
| Q |
343 |
atatttgtgagatccatataacttgggaatgaccaagatgctttcatttacttcactctcatagtagaaaaatcctcgtataatcatattgtttt |
437 |
Q |
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| T |
3682988 |
atatatgtgagatccatataacttgggaatgaccaagatgctttcatttacttcacactcatagtagaaaaatcctcgtataatcatattgtttt |
3682894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 3701891 - 3701836
Alignment:
| Q |
269 |
tgttggaagcttatgatttgtgaagttagatgggaccttgagagaaatatatggat |
324 |
Q |
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| T |
3701891 |
tgttggaagcttatgatttgtcaagtaaggcggggccttgagagaaatctatggat |
3701836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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