View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_low_3 (Length: 419)
Name: NF20150_low_3
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 11187341 - 11186940
Alignment:
| Q |
9 |
acatcatcataatgctagttcaagaaaaactcaagtttactttataatatagtataagtgtgtatgtgaggggtatagatagatggattgatatattcat |
108 |
Q |
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| T |
11187341 |
acatcatcataatgctagttcaagaaaaactcaagtttactttacaatatagtataagtttgtatgtgaggggtatagatagatggattgatatattcat |
11187242 |
T |
|
| Q |
109 |
ctttgccattcaaaataaaaagtgaatatgttataagtgcttatatgtaaaagnnnnnnnnacatt--------gctatttctataacaaaataaagaca |
200 |
Q |
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| T |
11187241 |
ctttgccattcaaaataaaaagtgaatatgttataagtgcttatatgtaaaag-tttttttacactatatataagctatttctgtaacaaaataaagaca |
11187143 |
T |
|
| Q |
201 |
atgttaaagtgtttttatataagctcaaaacaatttagggatatggcataagttgttttcaaacactctcacaaatcatctcacaagtacttatactaga |
300 |
Q |
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| T |
11187142 |
atgttaaagtgtttttatataagttcaaaacaatttagggatatggcataagttgttttcaaacactctcacaaatgatctcacaagtacttatactaga |
11187043 |
T |
|
| Q |
301 |
taaactnnnnnnnngaccaatttaaacaagtcctaaatcgattgaattttcatagaagagtgttactcgtgaattatcataaggtttgatctcaggttga |
400 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11187042 |
taaactaaaaacaagaccaatttaaacaagtcctaaatcgattgaatttttatagaagagtgttactcgtgaattatcataaggtttaatctcaggttga |
11186943 |
T |
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| Q |
401 |
tct |
403 |
Q |
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| T |
11186942 |
tct |
11186940 |
T |
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