View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_low_4 (Length: 395)
Name: NF20150_low_4
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 44736517 - 44736885
Alignment:
| Q |
1 |
tcaataccagttacaaaagcccacggcaactctttgagatcacaatgagtgttttatttcacgcagcttcattcttgaaacagttggttaagttaaaatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
44736517 |
tcaataccagttacaaaagcccacaacaactctttgagatcacaatgagtgttttatttcacgcagcttcattcttgaa-cagttgtttaagttaaaatg |
44736615 |
T |
|
| Q |
101 |
tgttatgttagaacatgtctttaaaacatgagaaataccttcttcaaatatgtaacgacagtcgttcaaatcaagttgctgcatatagaggaagggatag |
200 |
Q |
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| T |
44736616 |
tgttatgttagaacatgtccttaaaacatgagaaataccttcttcaaatatgtaacgacagtcgttcaaatcaagttgctgcatataggggaagggatag |
44736715 |
T |
|
| Q |
201 |
gcaatgaggaccagatcactattatcattgttggaacaaataagagaggttaaggttgaaatattctttcggtggaaggtttgcaaaattgcaccctatt |
300 |
Q |
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| T |
44736716 |
gcaatgaggaccagatcactattatcattgttggaacaaataagagaggttaaggttgaaatcttctttcggtggaaggtttgcaaaattgcaacctatt |
44736815 |
T |
|
| Q |
301 |
tctgggaaaggtgttgtgtcggagggaaaggatgagtgatgttgaagtgcaatgggaaacgagaggtttg |
370 |
Q |
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| T |
44736816 |
tctgggaaaggtgttgtgtcggagggaaagaatgagtgatgttgaagtgcaatgggaaaagagaggtttg |
44736885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 32151284 - 32151336
Alignment:
| Q |
2 |
caataccagttacaaaagcccacggcaactctttgagatcacaatgagtgttt |
54 |
Q |
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| T |
32151284 |
caataacagttgcaaaagcccactacaactctttgagatcacatagagtgttt |
32151336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 44246336 - 44246392
Alignment:
| Q |
230 |
gttggaacaaataagagaggttaaggttgaaatattctttcggtggaaggtttgcaa |
286 |
Q |
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|||||||||| | ||||||||||| || | |||||||||| || ||||||||||||| |
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| T |
44246336 |
gttggaacaagtgagagaggttaaagtagtaatattctttgggcggaaggtttgcaa |
44246392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 153
Target Start/End: Complemental strand, 1489312 - 1489269
Alignment:
| Q |
110 |
agaacatgtctttaaaacatgagaaataccttcttcaaatatgt |
153 |
Q |
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| T |
1489312 |
agaacatgtctttaaaacatggaaaataccttcttcagatatgt |
1489269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 558632 - 558677
Alignment:
| Q |
96 |
aaatgtgttatgttagaacatgtctttaaaacatgagaaatacctt |
141 |
Q |
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| T |
558632 |
aaatgtctaatgttagaacatgtccttaaaacatgacaaatacctt |
558677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 558487 - 558523
Alignment:
| Q |
8 |
cagttacaaaagcccacggcaactctttgagatcaca |
44 |
Q |
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| T |
558487 |
cagttccaaaagcccacgacaactctttgagatcaca |
558523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 1533962 - 1533898
Alignment:
| Q |
89 |
taagttaaaatgtgttatgttagaacatgtctttaaaacatgagaaataccttcttcaaatatgt |
153 |
Q |
| |
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|||||| |||||||| || ||| ||||| || ||||||||||| ||||||||||||| |||||| |
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| T |
1533962 |
taagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatgt |
1533898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 1548528 - 1548488
Alignment:
| Q |
14 |
caaaagcccacggcaactctttgagatcacaatgagtgttt |
54 |
Q |
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| T |
1548528 |
caaaagcccacaacaactctttgagatcacattgagtgttt |
1548488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 45245194 - 45245149
Alignment:
| Q |
9 |
agttacaaaagcccacggcaactctttgagatcacaatgagtgttt |
54 |
Q |
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|||| |||||||||||| |||||||||||||||||| |||||||| |
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| T |
45245194 |
agttgcaaaagcccacgacaactctttgagatcacatggagtgttt |
45245149 |
T |
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