View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20150_low_6 (Length: 341)
Name: NF20150_low_6
Description: NF20150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20150_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 7170979 - 7171287
Alignment:
| Q |
19 |
agagaacaacatgattattttataaactcaatggtttgtcaacaatgnnnnnnnnnnnn--ttacagctatcatatctctatctttttctccaattgggt |
116 |
Q |
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| T |
7170979 |
agagaaccacatgattattttataaactcaatggtttgtcaacaatgatatatatatatatttacaactatcatatctctatctttttctccaattgggt |
7171078 |
T |
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| Q |
117 |
atacacaaaatagttttgtattagatttcgctatcgaagtctccaaatcgcaagcaaatcttcgttcnnnnnnngtcattggttgatatcgaatcattat |
216 |
Q |
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| T |
7171079 |
gtacacaaaatagttttctattagatttcgctatcgaagtctccaaatcgcaagcaaatcttcgttctttttttgtcattggtttatatcgaatcattgt |
7171178 |
T |
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| Q |
217 |
tatatcctctatgatcgagacaaataatatgttgcagaagatgaataggctaaagatgaattcaattattaccagcttcaagattgttctcgtttccctc |
316 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7171179 |
tatatccactatgatcgagacaaataatatgttgcagaagatgaataggctaaaaatgaattcaattattaccagcttcaagattgttctcgtttccctc |
7171278 |
T |
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| Q |
317 |
agttttctt |
325 |
Q |
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||||||||| |
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| T |
7171279 |
agttttctt |
7171287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 7174346 - 7174430
Alignment:
| Q |
79 |
tacagctatcatatc-tctatctttttctccaattgggtatacacaaaatagttttgtattagatttcgctatcgaagtctccaa |
162 |
Q |
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|||| |||||||||| |||||||||||| ||||||| | ||||| |||||||||| ||| ||||||| ||||||| |||||||| |
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| T |
7174346 |
tacaactatcatatcctctatctttttcctcaattggatgtacacgaaatagttttctataagatttccctatcgacgtctccaa |
7174430 |
T |
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