View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_105 (Length: 284)
Name: NF20151_high_105
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_105 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 34962294 - 34962571
Alignment:
| Q |
7 |
gagaagcataggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacattttgatcccaatggagtcacgagtgttgtca |
106 |
Q |
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| T |
34962294 |
gagaaccacaggtaccaacaccaacatcatccatatatcactctctacttgtttatcatcttcccacattttgatcccaatggagtcacgagtgttgtca |
34962393 |
T |
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| Q |
107 |
cgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatcgatcggatcag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962394 |
cgcgccaccacactctcctccctccctcgtctcaacaaacttcatcgtgaacatctcaccaatggcgcttccatcctctccgtgaaatcgatcggatcag |
34962493 |
T |
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| Q |
207 |
tctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34962494 |
tctctgatggcgggaaccttgtctttggaagacaacttcgtcctgaactctgttcacctgctcttaagaaaagtggtg |
34962571 |
T |
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