View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_110 (Length: 275)

Name: NF20151_high_110
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_110
NF20151_high_110
[»] chr8 (3 HSPs)
chr8 (1-265)||(1846486-1846750)
chr8 (143-184)||(4297560-4297601)
chr8 (143-196)||(4619755-4619808)
[»] chr1 (17 HSPs)
chr1 (1-265)||(7890971-7891235)
chr1 (4-233)||(7888709-7888938)
chr1 (143-265)||(38138021-38138143)
chr1 (5-144)||(43045209-43045348)
chr1 (5-144)||(43045662-43045801)
chr1 (5-144)||(43066606-43066745)
chr1 (5-144)||(43084090-43084229)
chr1 (143-265)||(3300731-3300853)
chr1 (143-233)||(45983863-45983953)
chr1 (5-144)||(38137791-38137930)
chr1 (143-265)||(43044997-43045119)
chr1 (143-265)||(43066872-43066994)
chr1 (143-265)||(43083841-43083963)
chr1 (143-194)||(50912450-50912501)
chr1 (5-144)||(45993423-45993562)
chr1 (70-144)||(40034688-40034762)
chr1 (143-196)||(40034854-40034907)
[»] chr2 (4 HSPs)
chr2 (143-196)||(34690912-34690965)
chr2 (143-196)||(34713324-34713377)
chr2 (40-135)||(33861060-33861155)
chr2 (143-196)||(16232253-16232306)
[»] chr4 (1 HSPs)
chr4 (5-144)||(4231682-4231821)
[»] chr6 (2 HSPs)
chr6 (7-81)||(7529023-7529097)
chr6 (7-81)||(7519652-7519726)


Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 1846750 - 1846486
Alignment:
Q  1 tccgaagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846750 tccgaagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttg 1846651  T
Q  101 cctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846650 cctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtca 1846551  T
Q  201 aatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1846550 aatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctg 1846486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 4297601 - 4297560
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatg 184  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  4297601 agatggatgccactacacccaaatactccatggataggtatg 4297560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 4619808 - 4619755
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 196  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || ||||||    
T  4619808 agatggatgccactgcacccaaatactccaagtataggtatgaagaatttgtga 4619755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 7890971 - 7891235
Alignment:
Q  1 tccgaagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttg 100  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  7890971 tccgaagctgactgtgctgttcttatcattgattctacacttggtggttttgacgctggtttttgtaagaatggtcagaccactgaacatgttcaacttg 7891070  T
Q  101 cctacgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtca 200  Q
    | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7891071 cattcgctcttggtgtttcacaaatgatctgctgttgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtca 7891170  T
Q  201 aatttcaccctttttgagcgaggttggctataacccaggtaaaattccttttatccctatctctg 265  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  7891171 aatttcaccctttttgagtgaggttggctataacctaggtaaaattccttttatccctatctctg 7891235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 7888709 - 7888938
Alignment:
Q  4 gaagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcct 103  Q
    |||||||| ||||| ||||| |||||||| || ||| |||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  7888709 gaagctgattgtgctgttctcatcattgattccacaactggtggttttgaagccggtttttgtaaggatggtcagaccactgaacatgttcaacttgcct 7888808  T
Q  104 acgctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaat 203  Q
     |||||| ||||||| | |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||| |||| |    
T  7888809 tcgctctcggtgtttaaaaaatgatctgctgctgcaacaagatggatgccactacacccatatactcctaggacaggtatgaagaaattgtgaatcaagt 7888908  T
Q  204 ttcaccctttttgagcgaggttggctataa 233  Q
    ||||||||||||||| ||||||||||||||    
T  7888909 ttcaccctttttgagagaggttggctataa 7888938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 38138021 - 38138143
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 242  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||  || ||||||||||||| || | |    
T  38138021 agatggatgccactacacccaaatactccaaggataggtatgaagaaattgtgaaggaattttcaccctttttgattgatgttggctataacctagatga 38138120  T
Q  243 aattccttttatccctatctctg 265  Q
    |||||| ||| | || |||||||    
T  38138121 aattccatttgttcccatctctg 38138143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 43045348 - 43045209
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||||||||| |||||||| || ||  |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| |     
T  43045348 aagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgcttt 43045249  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    |||||||||||||| || ||||||    
T  43045248 cactcttggtgtgaagcaaatgatctgctgttgcaacaag 43045209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 43045801 - 43045662
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||||||||| |||||||| || ||  |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| |     
T  43045801 aagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgcttt 43045702  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    |||||||||||||| || ||||||    
T  43045701 cactcttggtgtgaagcaaatgatctgctgttgcaacaag 43045662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 43066606 - 43066745
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||||||||| |||||||| || ||  |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| |     
T  43066606 aagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgcttt 43066705  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    |||||||||||||| || ||||||    
T  43066706 cactcttggtgtgaagcaaatgatctgctgttgcaacaag 43066745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 43084229 - 43084090
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||||||||| |||||||| || ||  |||||||||||||||| ||| ||| |||| |||||||||||  |||||||| ||  ||||| |     
T  43084229 aagctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgcttt 43084130  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    |||||||||||||| || ||||||    
T  43084129 cactcttggtgtgaagcaaatgatctgctgttgcaacaag 43084090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 3300853 - 3300731
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 242  Q
    ||||||||||||||||||| || ||||| |||| |||||||||| |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  3300853 agatggatgccactacacctaagtactcgaagggtaggtatgaagaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 3300754  T
Q  243 aattccttttatccctatctctg 265  Q
    |||||| ||| | || |||||||    
T  3300753 aattccatttgttcccatctctg 3300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 45983863 - 45983953
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataa 233  Q
    ||||||||||||||||||| |||||||| | ||||||||||| | |||||||||| ||| ||| ||||| |||||   |||||||||||||    
T  45983863 agatggatgccactacacctaaatactctagggataggtatgtagaaattgtgaggcaagttttaccctgtttgaataaggttggctataa 45983953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 38137791 - 38137930
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||||||||| |||||  ||||||| || ||| ||||| ||||||||||||||| || | || | |||||||||  |||||||| ||  ||||| |     
T  38137791 aagctgactgtgctgttctcgtcattgattccacaactggtagttttgaagctggttattctcaggaaggtcagacctctgaacatgctcttcttgcatt 38137890  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    || |||||||||    ||||||||||||||||| ||||||    
T  38137891 cgttcttggtgtgcgccaaatgatctgctgctgcaacaag 38137930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 43045119 - 43044997
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 242  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43045119 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43045020  T
Q  243 aattccttttatccctatctctg 265  Q
    |||||| ||| | || |||||||    
T  43045019 aattccatttgttcccatctctg 43044997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 43066872 - 43066994
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 242  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43066872 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43066971  T
Q  243 aattccttttatccctatctctg 265  Q
    |||||| ||| | || |||||||    
T  43066972 aattccatttgttcccatctctg 43066994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 43083963 - 43083841
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtgagtcaaatttcaccctttttgagcgaggttggctataacccaggtaa 242  Q
    |||||||||| ||||||||||| |||||||||| ||| |||||  |||||||||   || ||||| ||| |||||   ||||||||||||||||||  ||    
T  43083963 agatggatgctactacacccaagtactccaagggtagatatgatgaaattgtgaaggaagtttcatcctatttgaagaaggttggctataacccagacaa 43083864  T
Q  243 aattccttttatccctatctctg 265  Q
    |||||| ||| | || |||||||    
T  43083863 aattccatttgttcccatctctg 43083841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 50912501 - 50912450
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgt 194  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||||    
T  50912501 agatggatgctactactcccaaatactccaagggtaggtatgaagaaattgt 50912450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 45993423 - 45993562
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||| ||||| |||||||| || ||  || ||||||||||||| ||| |||  ||| ||||||||||   |||||||| ||  |||||||     
T  45993423 aagctgattgtgctgttctcatcattgattccactactcgtggttttgaagccggtatttcaaaggatggtcagactcgtgaacatgctcttcttgcctt 45993522  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    ||||||||||| ||||| ||||||    
T  45993523 cactcttggtgtgaatcaaatgatctgttgctgcaacaag 45993562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 40034688 - 40034762
Alignment:
Q  70 aatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    ||||||||||||| |||||||| ||  ||||||||  ||||||||||    ||||||||||||||||| ||||||    
T  40034688 aatggtcagaccactgaacatgctcttcttgcctatactcttggtgtgaatcaaatgatctgctgctgcaacaag 40034762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 40034854 - 40034907
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 196  Q
    |||||||||| ||||||||||||||||| |||| ||||| |||| || ||||||    
T  40034854 agatggatgcaactacacccaaatactctaagggtaggtttgaagaacttgtga 40034907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 34690965 - 34690912
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 196  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34690965 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34690912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 34713377 - 34713324
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 196  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34713377 agatggatgccattacacccaaatactccaaggataggtatgaactaattgtga 34713324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 33861155 - 33861060
Alignment:
Q  40 cctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacgctcttggtgtttcacaaatgatctgctgc 135  Q
    |||||||||||||||| |||||||| |||| |||||||||||  ||||||||  |  || |||| | ||||||||||  | |||||||||||||||    
T  33861155 cctggtggttttgaagttggtttttctaagcatggtcagacccgtgaacatgcccttctcgcctgcactcttggtgtgcctcaaatgatctgctgc 33861060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 16232306 - 16232253
Alignment:
Q  143 agatggatgccactacacccaaatactccaaggataggtatgaacaaattgtga 196  Q
    ||||| ||||||||||||| |||||||||||||| || ||||||  ||||||||    
T  16232306 agatgaatgccactacaccgaaatactccaaggacagatatgaagtaattgtga 16232253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 4231821 - 4231682
Alignment:
Q  5 aagctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgccta 104  Q
    ||||||| ||||| ||||| |||||||| || ||  |||||||||||||||||||| |||  ||| ||||||||||   |||||||| ||  ||||| |     
T  4231821 aagctgattgtgctgttctcatcattgattccaccactggtggttttgaagctggtatttccaaggatggtcagactcgtgaacatgctctccttgcttt 4231722  T
Q  105 cgctcttggtgtttcacaaatgatctgctgctgtaacaag 144  Q
    | ||||||||||    ||||||||||||||||| ||||||    
T  4231721 cactcttggtgtgaggcaaatgatctgctgctgcaacaag 4231682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 7529023 - 7529097
Alignment:
Q  7 gctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagacc 81  Q
    ||||| |||||||| |||||||||||||| ||  |||||||||||||||||||| | | |||| |||| ||||||    
T  7529023 gctgattgtgccgtgcttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacc 7529097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 7519652 - 7519726
Alignment:
Q  7 gctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagacc 81  Q
    ||||| ||||| || |||||||||||||| ||  |||||||||||||||||||| | | |||| |||| ||||||    
T  7519652 gctgattgtgctgtccttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacc 7519726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University