View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_112 (Length: 274)

Name: NF20151_high_112
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_112
NF20151_high_112
[»] chr7 (1 HSPs)
chr7 (93-133)||(31448364-31448404)
[»] scaffold0263 (1 HSPs)
scaffold0263 (90-133)||(13370-13413)
[»] scaffold0002 (1 HSPs)
scaffold0002 (90-133)||(91998-92041)
[»] chr3 (2 HSPs)
chr3 (92-133)||(42380550-42380591)
chr3 (92-133)||(42409264-42409305)
[»] chr8 (4 HSPs)
chr8 (86-120)||(36430472-36430506)
chr8 (88-125)||(15196543-15196580)
chr8 (92-125)||(38125627-38125660)
chr8 (89-122)||(43980438-43980471)
[»] chr1 (1 HSPs)
chr1 (91-125)||(46836420-46836454)
[»] scaffold0064 (1 HSPs)
scaffold0064 (92-133)||(22408-22449)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-133)||(90172-90217)
[»] scaffold0009 (1 HSPs)
scaffold0009 (88-133)||(143386-143431)
[»] chr4 (3 HSPs)
chr4 (92-125)||(32564872-32564905)
chr4 (90-126)||(7209100-7209136)
chr4 (93-133)||(32564829-32564869)
[»] chr2 (2 HSPs)
chr2 (92-133)||(12457053-12457094)
chr2 (88-125)||(33810612-33810649)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 31448364 - 31448404
Alignment:
Q  93 tactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  31448364 tactcattccgtccctatatgtaagcaccctttgcatctaa 31448404  T

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Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 13370 - 13413
Alignment:
Q  90 aaatactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  13370 aaatactccctccgtccctatatgtaagcaccttttgcatctaa 13413  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 91998 - 92041
Alignment:
Q  90 aaatactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  91998 aaatactccctccgtccctatatgtaagcaccttttgcatctaa 92041  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 42380550 - 42380591
Alignment:
Q  92 atactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  42380550 atactccatccgtccctatatgtaagcaccctttgcctctaa 42380591  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 42409264 - 42409305
Alignment:
Q  92 atactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  42409264 atactccatccgtccctatatgtaagcaccctttgcctctaa 42409305  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 36430506 - 36430472
Alignment:
Q  86 atttaaatactccttccgtccctatatgtaagcac 120  Q
    ||||||||||||| |||||||||||||||||||||    
T  36430506 atttaaatactccctccgtccctatatgtaagcac 36430472  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 15196580 - 15196543
Alignment:
Q  88 ttaaatactccttccgtccctatatgtaagcacccttt 125  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  15196580 ttaaatactccctccgtccctatatctaagcacccttt 15196543  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 38125660 - 38125627
Alignment:
Q  92 atactccttccgtccctatatgtaagcacccttt 125  Q
    ||||||| ||||||||||||||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttt 38125627  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 43980438 - 43980471
Alignment:
Q  89 taaatactccttccgtccctatatgtaagcaccc 122  Q
    |||||||||| |||||||||||||||||||||||    
T  43980438 taaatactccctccgtccctatatgtaagcaccc 43980471  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 125
Target Start/End: Complemental strand, 46836454 - 46836420
Alignment:
Q  91 aatactccttccgtccctatatgtaagcacccttt 125  Q
    |||||||||||||||||||||| ||||||||||||    
T  46836454 aatactccttccgtccctatatctaagcacccttt 46836420  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 22449 - 22408
Alignment:
Q  92 atactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    |||||||||||||||||||| ||||||||| || ||||||||    
T  22449 atactccttccgtccctatacgtaagcacctttagcatctaa 22408  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 90217 - 90172
Alignment:
Q  88 ttaaatactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||    
T  90217 ttaaatactccctccgtttctatatgtaagcaccctttgcctctaa 90172  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 143431 - 143386
Alignment:
Q  88 ttaaatactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    |||| |||||| |||||||||||||||||||| ||||||| |||||    
T  143431 ttaattactccctccgtccctatatgtaagcatcctttgcctctaa 143386  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 32564905 - 32564872
Alignment:
Q  92 atactccttccgtccctatatgtaagcacccttt 125  Q
    ||||||| ||||||||||||||||||||||||||    
T  32564905 atactccctccgtccctatatgtaagcacccttt 32564872  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 7209136 - 7209100
Alignment:
Q  90 aaatactccttccgtccctatatgtaagcaccctttg 126  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  7209136 aaatactccctccgtccctatatgtaagcactctttg 7209100  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 32564829 - 32564869
Alignment:
Q  93 tactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    |||||| ||||||||||||||||||||| |||||| |||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaa 32564869  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 12457094 - 12457053
Alignment:
Q  92 atactccttccgtccctatatgtaagcaccctttgcatctaa 133  Q
    ||||||| || ||||||||||||||||||||||||| |||||    
T  12457094 atactccctctgtccctatatgtaagcaccctttgcctctaa 12457053  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 33810612 - 33810649
Alignment:
Q  88 ttaaatactccttccgtccctatatgtaagcacccttt 125  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  33810612 ttaaatactcccttcgtccctatatgtaagcacccttt 33810649  T

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