View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_117 (Length: 264)
Name: NF20151_high_117
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_117 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 26614175 - 26613962
Alignment:
| Q |
34 |
aatcaaattgagaagcacaacaatgagttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaat |
133 |
Q |
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| T |
26614175 |
aatcaaattgagaagcacaa--atgaattgtgtctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaat |
26614078 |
T |
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| Q |
134 |
gtcatgttatcttgcttatgatcttcccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccat |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26614077 |
gtcatgttatcttgcttatgatcttcccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccat |
26613978 |
T |
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| Q |
234 |
ttttcaatgtccaaac |
249 |
Q |
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|||||||||||||||| |
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| T |
26613977 |
ttttcaatgtccaaac |
26613962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 26649675 - 26649486
Alignment:
| Q |
60 |
gttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
159 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649675 |
gttgtgtctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
26649576 |
T |
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| Q |
160 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
249 |
Q |
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| T |
26649575 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
26649486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 60 - 249
Target Start/End: Complemental strand, 26717117 - 26716928
Alignment:
| Q |
60 |
gttgtgtctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
159 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26717117 |
gttgtgtctaaatagccaagacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttc |
26717018 |
T |
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| Q |
160 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
249 |
Q |
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| T |
26717017 |
ccaccttaatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
26716928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 68 - 249
Target Start/End: Complemental strand, 26629118 - 26628937
Alignment:
| Q |
68 |
taaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacctta |
167 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26629118 |
taaatagctaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacctta |
26629019 |
T |
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| Q |
168 |
atggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
249 |
Q |
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| T |
26629018 |
atggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
26628937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 66 - 249
Target Start/End: Complemental strand, 26637605 - 26637422
Alignment:
| Q |
66 |
tctaaatagctaagacaagtccaggaagtgatctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccacct |
165 |
Q |
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||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26637605 |
tctaaataggtaacacaagtccaggaagtgacctacgataaagatcacgaggttgacttctccacaatgtcatgttatcttgcttatgatcttcccactt |
26637506 |
T |
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| Q |
166 |
taatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26637505 |
taatggcctcaaatctctcacaacaagccatgtattgaaatactctctaaattgtgtaattaacccatttttcaatgtccaaac |
26637422 |
T |
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