View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_12 (Length: 571)
Name: NF20151_high_12
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 6e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 40848915 - 40849102
Alignment:
| Q |
188 |
ttagttagtgagcctaaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttatacat |
287 |
Q |
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| T |
40848915 |
ttagttagtgagccttaatcttattcattgcctatagtgtatctcgttgatttgtttgtaatagtaaaatttgaagacatttgtaatgaagtttacacat |
40849014 |
T |
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| Q |
288 |
tcgattttccaatcac-gtttataactctacaagtgtagagaaaaccatgaagagcatagtctaatcaaattggtattgagaatttaag |
375 |
Q |
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| T |
40849015 |
tcgattttccaatcactgtttataactctacaagtgtagagaaaaccatgaagagcatagtctaatc-aattggtattgagaatttaag |
40849102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 428 - 555
Target Start/End: Original strand, 40849155 - 40849287
Alignment:
| Q |
428 |
tgtattttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataaga-----atctgatttttgttttaagatgagtgcattatat |
522 |
Q |
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| T |
40849155 |
tgtattttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagataagaatgtgatttttgttttaagatgagtgcattatat |
40849254 |
T |
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| Q |
523 |
agacgagacattatctcctccctttgtccttat |
555 |
Q |
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| T |
40849255 |
agacgagacattatctcctccctttgtccttat |
40849287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 40848740 - 40848862
Alignment:
| Q |
12 |
ccttttccccgtgttatgtctataaatcataaaatgaatgcacctcatttatttattgaatcattgtaaaatagaaaaatgatttcaacctaagtgaagg |
111 |
Q |
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| T |
40848740 |
ccttttcccattgttatgtctattaatcataaactgagtgcacctcattcatt-attgaatcattgtaaaatagaaaaatgattacaacctaagtgaagg |
40848838 |
T |
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| Q |
112 |
tggcggatactccttttatataag |
135 |
Q |
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| T |
40848839 |
aggaggatactccttttatataag |
40848862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 504
Target Start/End: Original strand, 40843348 - 40843420
Alignment:
| Q |
432 |
ttttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagaatctgatttttgtttt |
504 |
Q |
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| T |
40843348 |
ttttattcatcattccaatgtttacaaggaaatgccattaatgtttatacaacaagaatgtgattttggtttt |
40843420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 522
Target Start/End: Original strand, 40838626 - 40838716
Alignment:
| Q |
432 |
ttttattcatccttccaatgttcacaaggaaatgccattaatgtgtatacaataagaatctgatttttgttttaagatgagtgcattatat |
522 |
Q |
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| T |
40838626 |
ttttattcattattccaatgttcacaaggaaatgacattaatgtttagacaacaagaatgtgattttggttttgtgctgagtgcatcatat |
40838716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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