View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_120 (Length: 256)
Name: NF20151_high_120
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_120 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 31700527 - 31700365
Alignment:
| Q |
82 |
gatgttccaacttctttaaattaaacagtagaaggagcctgaacttggcctacagaaaagttacaaataggaaaagggaacagatttggagggacatttc |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
31700527 |
gatgttccaacttctttaaattaaacagtagaaggagcctgaacttggcctacagaaaagttacaattaggaaaagggaatagatttggagggacatttc |
31700428 |
T |
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| Q |
182 |
cctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaatattca |
244 |
Q |
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| T |
31700427 |
cctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaatattca |
31700365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 29782296 - 29782366
Alignment:
| Q |
168 |
tggagggacatttccctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaa |
238 |
Q |
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| T |
29782296 |
tggaggggcattcccctgccagcatctagttccaacagactttgccaaagcggctaaattatgagcttcaa |
29782366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 36092833 - 36092737
Alignment:
| Q |
142 |
ttacaaataggaaaagggaacagatttggagggacatttccctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaa |
238 |
Q |
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| T |
36092833 |
ttacaaaaaggagaagggaacaggcttggaggggcattcccctgccaacatctagtgcctacagactttgccaaagaggctaagttatgagcttcaa |
36092737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 35065945 - 35065990
Alignment:
| Q |
82 |
gatgttccaacttctttaaattaaacagtagaaggagcctgaacttgg |
129 |
Q |
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| T |
35065945 |
gatgttccaacttctttaaa--aaacagcagaaggggcctgaacttgg |
35065990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 22088829 - 22088767
Alignment:
| Q |
3 |
gtgtaattttccctgtcattttgttgctatcaattacacatttttctcattccaaaatcaatg |
65 |
Q |
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| T |
22088829 |
gtgtaattttccctgtcattttgttgctatcaatcacacatttttctcattccaaaatcaatg |
22088767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 20385934 - 20386032
Alignment:
| Q |
140 |
agttacaaataggaaaagggaacagatttggagggacatttccctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaa |
238 |
Q |
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| T |
20385934 |
agttacaaaaaggagaagggaaatggcttggaggggcattcccctgccaacatctagtgcctagagactttgccaaagaggctaagttatgagcttcaa |
20386032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 10135353 - 10135477
Alignment:
| Q |
112 |
gaaggagcctgaacttggcctacagaaaagttacaaataggaaaagggaacagatttggagggacatttccctgccagcatctagatccaagattctttg |
211 |
Q |
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|||||||||||||| ||| |||| || |||||||| |||| ||| ||||||| |||||| | |||| |||||||||||||||| ||| | | |||||| |
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| T |
10135353 |
gaaggagcctgaacacggcttacaacaatgttacaaaaaggagaagtgaacagacttggagaggcattcccctgccagcatctagttcctacagtctttg |
10135452 |
T |
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| Q |
212 |
ccaaagaggctaaattatgagcttc |
236 |
Q |
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| T |
10135453 |
tcaaagaggctaaactgtgagcttc |
10135477 |
T |
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Target: scaffold0069 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 64558 - 64629
Alignment:
| Q |
167 |
ttggagggacatttccctgccagcatctagatccaagattctttgccaaagaggctaaattatgagcttcaa |
238 |
Q |
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| T |
64558 |
ttggaggggcattcccctgccaacatctagtgcctagagactttgccaaagaggctaagttatgagcttcaa |
64629 |
T |
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