View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_121 (Length: 255)
Name: NF20151_high_121
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_121 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2572823 - 2573064
Alignment:
| Q |
1 |
atcatgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtga |
100 |
Q |
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| T |
2572823 |
atcatgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtga |
2572922 |
T |
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| Q |
101 |
gcttgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctctgcagtgctattcgttggggtgcagatttcat |
200 |
Q |
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| T |
2572923 |
gcttgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctccgcagtgctattcgttggggtgcagatttcat |
2573022 |
T |
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| Q |
201 |
acttaaagctcacacttccccaaccacgctctttacacaggt |
242 |
Q |
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| T |
2573023 |
acttaaagctcacacttccccaaccacgctctttacacaggt |
2573064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 2562843 - 2563081
Alignment:
| Q |
4 |
atgtgtattatatatttttggcaggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttggatggccgatgtcatttacagtgagct |
103 |
Q |
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| T |
2562843 |
atgtgtattatatatctttggcaggtgaatttggttggaggatactatgatgctggtgataatgtaaagtttggatggccaatgtcatttacagtcagct |
2562942 |
T |
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| Q |
104 |
tgttgagttgggctgctgttgaatatgaaagtgagatttcttctgcgaaccagcttgattatctctgcagtgctattcgttggggtgcagatttcatact |
203 |
Q |
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| T |
2562943 |
tattgagttgggctgctgttgaatatgaaagtgagatttcttcagttaaccagattggttatctccgccgtgctattcgttggggtacaaatttcatact |
2563042 |
T |
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| Q |
204 |
taaagctcacacttccccaaccacgctctttacacaggt |
242 |
Q |
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| T |
2563043 |
tcaatctcacacttctccaatcacgctcttcacacaggt |
2563081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 28582497 - 28582445
Alignment:
| Q |
25 |
caggtagatttggttggaggatactacgacgcaggtgataatgtgaagtttgg |
77 |
Q |
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| T |
28582497 |
caggtagacttggtgggagggtactatgatgcaggtgatcatgtgaagtttgg |
28582445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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