View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_122 (Length: 253)
Name: NF20151_high_122
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_122 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33771034 - 33770790
Alignment:
| Q |
1 |
cttctttgtaaactcattatcaaagggtacatccaaggttgttgctccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactact |
100 |
Q |
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| T |
33771034 |
cttctttgtaaactcattatcaaagggtacatccaaggttgttggtccaataaatgaattgttatcagaagaaaatccaccaatctatagggacactact |
33770935 |
T |
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| Q |
101 |
gtgaatgatttcttgacacattattatgaaaaatgttctgatgggagctcctctttgcagcctttcaaggtgtgagttaaatattaagaattagattgga |
200 |
Q |
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| T |
33770934 |
gtgaatgatttcttggcacattattatgaaaaatctcttgatgggagctcttccttgcagcctttcagagtgtgaattaaatattaagaattagattgga |
33770835 |
T |
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| Q |
201 |
gcaataaaaatttccttttattgatggccttcaattacttcttct |
245 |
Q |
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| T |
33770834 |
gcaataaaaatgtccttttattgatggccttcaattatttcttct |
33770790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 202
Target Start/End: Complemental strand, 33761605 - 33761431
Alignment:
| Q |
28 |
tacatccaaggttgttgctccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattat |
127 |
Q |
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| T |
33761605 |
tacatccaaggttgttgctccaataaaggaattgctatcagaagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacattatttt |
33761506 |
T |
|
| Q |
128 |
gaaaaatgttctgatgggagctcctctttgcagcctttcaaggtgtgagttaaatattaagaattagattggagc |
202 |
Q |
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| T |
33761505 |
acaaaaggccttgatggtaactcttccttgcaccctttcaggctgtaaaataagtattaagaataagattggagc |
33761431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 33768198 - 33768123
Alignment:
| Q |
30 |
catccaaggttgttgctccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaa |
105 |
Q |
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| T |
33768198 |
catccaaggtccttggtccaataaaggaattgttatcagaagaaaatccggcaatctatagggatactactgtgaa |
33768123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 28130728 - 28130810
Alignment:
| Q |
46 |
tccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattatg |
128 |
Q |
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| T |
28130728 |
tccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaaatcttgacaaattattatg |
28130810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 41242347 - 41242429
Alignment:
| Q |
46 |
tccaataaatgaactgttatcagaagaaaatccagcaatctatagggacactactgtgaatgatttcttgacacattattatg |
128 |
Q |
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||||||||| ||| |||||||||||||||| || |||||||||| || | |||| |||| || |||||||| ||||||||| |
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| T |
41242347 |
tccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaaatcttgacaaattattatg |
41242429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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