View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_123 (Length: 253)
Name: NF20151_high_123
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_123 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 15640117 - 15639896
Alignment:
| Q |
14 |
agatggattcggagtctagtttaggtccatatgagggtttgccttttccttctgcacttcttcacttttctgcatcttggatgtcaaggaatgaaagtga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15640117 |
agatggattcggagtctagtttaggtccagctgagggtttgccttttccttctgcacttcttcacttttctgcattttggatgtcaaggaatgaaagtgg |
15640018 |
T |
|
| Q |
114 |
aaaattagggttgtgactggtcactacatcggtaaggattgtgctatgccacctgtcctttattaggacgtagtttttctttgcttctttttcccctctc |
213 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15640017 |
aaaattagggttgtgactggacaccacatcggtgaggattgcgctatgccacctgtcctttattaggacgtagtttttctttgcttctttttcccctctc |
15639918 |
T |
|
| Q |
214 |
ttgtaaccaaaaaagtcggagg |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
15639917 |
atgtaaccaaaaaagtcggagg |
15639896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 19258313 - 19258241
Alignment:
| Q |
98 |
caaggaatgaaagtgaaaaattagggttgtgactggtcactacatcggtaaggattgtgctatgccacctgtc |
170 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| ||| |||||||| ||||||| |||||||| ||||| |
|
|
| T |
19258313 |
caaggaaagaaagtggaaaattagggttgtgactggacaccacatcggtgaggattgcactatgccatctgtc |
19258241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 18702592 - 18702553
Alignment:
| Q |
167 |
tgtcctttattaggacgtagtttttctttgcttctttttc |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18702592 |
tgtcctttattaggacgtagttttgctttgcttctttttc |
18702553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 26423679 - 26423718
Alignment:
| Q |
167 |
tgtcctttattaggacgtagtttttctttgcttctttttc |
206 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26423679 |
tgtccattattaggacgtagtttttctttgcttctttttc |
26423718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 7968313 - 7968275
Alignment:
| Q |
167 |
tgtcctttattaggacgtagtttttctttgcttcttttt |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7968313 |
tgtcctttattaggacgtagtttttctttgctttttttt |
7968275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 27111498 - 27111527
Alignment:
| Q |
177 |
taggacgtagtttttctttgcttctttttc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27111498 |
taggacgtagtttttctttgcttctttttc |
27111527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 27428128 - 27428091
Alignment:
| Q |
167 |
tgtcctttattaggacgtagtttttctttgcttctttt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27428128 |
tgtcctttattaggacgtagtttttctttgcttttttt |
27428091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 34545503 - 34545470
Alignment:
| Q |
173 |
ttattaggacgtagtttttctttgcttctttttc |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
34545503 |
ttattaggacgtagtttttctttacttctttttc |
34545470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 32925166 - 32925134
Alignment:
| Q |
167 |
tgtcctttattaggacgtagtttttctttgctt |
199 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
32925166 |
tgtcctttattaggacatagtttttctttgctt |
32925134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University