View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_126 (Length: 252)
Name: NF20151_high_126
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_126 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 95714 - 95927
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95714 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
95813 |
T |
|
| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95814 |
tcctcgtatggactattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
95913 |
T |
|
| Q |
219 |
ccgaagaggcattt |
232 |
Q |
| |
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|||||||||||||| |
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| T |
95914 |
ccgaagaggcattt |
95927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 87698 - 87912
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
87698 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttt |
87797 |
T |
|
| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
218 |
Q |
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||||||| |||||||||||| |||||||||| |||||| || | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
87798 |
tcctcgtttggactattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacg |
87897 |
T |
|
| Q |
219 |
ccgaagaggcatttg |
233 |
Q |
| |
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||||||||||||||| |
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| T |
87898 |
ccgaagaggcatttg |
87912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 40870568 - 40870355
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870568 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
40870469 |
T |
|
| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870468 |
tcctcgtatggactattcaggtaaccctccttttcagggcatatatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
40870369 |
T |
|
| Q |
219 |
ccgaagaggcattt |
232 |
Q |
| |
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|||||||||||||| |
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| T |
40870368 |
ccgaagaggcattt |
40870355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 40878585 - 40878371
Alignment:
| Q |
19 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttt |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
40878585 |
caaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaacgctttt |
40878486 |
T |
|
| Q |
119 |
tcctcgtatggactattcaggtaaccctccttttcagggcatctatcccaaggatgttcatggtgaaaagtggcatttcaggcatgtttataggggcacg |
218 |
Q |
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||||||| |||||||||||| |||||||||| |||||| || | |||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
40878485 |
tcctcgtttggactattcagctaaccctcctcttcaggatatttttcccaaggatgttcatggcgaaaagtggcatttcaggcacgtttataggggcacg |
40878386 |
T |
|
| Q |
219 |
ccgaagaggcatttg |
233 |
Q |
| |
|
||||||||||||||| |
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|
| T |
40878385 |
ccgaagaggcatttg |
40878371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 40352777 - 40352688
Alignment:
| Q |
35 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcg |
124 |
Q |
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|
||||||||| || || |||||||| |||||||||||||||||||| || || ||| ||||||||| ||||| |||| |||||||||||| |
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| T |
40352777 |
atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagatactgtgctgaaacgatttttcctcg |
40352688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 28346744 - 28346823
Alignment:
| Q |
51 |
ttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgcagaaatgatttttcctcgtatgga |
130 |
Q |
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||||| ||||||||||| ||||||||||| || |||||| |||||| |||||||| || | |||||| |||||| |||| |
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| T |
28346744 |
ttgactcaatctgatgctaacaatggtggaggtttttctgttcctaggtattgtgccgagacgattttccctcgtttgga |
28346823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 42730140 - 42730210
Alignment:
| Q |
36 |
tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgtgc |
106 |
Q |
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|||||||| || || || |||||||||||||||||||| ||||| || |||||| ||||||||| ||||| |
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| T |
42730140 |
tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagatactgtgc |
42730210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
| Q |
35 |
atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct |
89 |
Q |
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|
||||||||| || || ||||| ||||||||||||||||||||||| || |||||| |
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|
| T |
21715642 |
atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct |
21715696 |
T |
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