View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_127 (Length: 252)
Name: NF20151_high_127
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_127 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 39265939 - 39265726
Alignment:
| Q |
10 |
atatatacattgttctgaattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcagatcaatccaaatatgta |
109 |
Q |
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| T |
39265939 |
atatatacattgttctgaattatcttttgaaagaataggtttgtaagattgatccataactgataattttttattgtatgcagatcaatccaaatatgta |
39265840 |
T |
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| Q |
110 |
ttgtgttttgttggtgctctgacatccacatggagaagtagcttcgtaggattggtccaataactgatacnnnnnnnnagcagaaagtgtgactgttgag |
209 |
Q |
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| T |
39265839 |
ttgtgttttgctggtgctctgacatccacatggagaagtagcttcgtaggattgatccaataactgatacttttttttagcagaaagtgtgactgttgag |
39265740 |
T |
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| Q |
210 |
aattttcaattgag |
223 |
Q |
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|||||||||||||| |
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| T |
39265739 |
aattttcaattgag |
39265726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 22964940 - 22965089
Alignment:
| Q |
22 |
ttctgaattatcttttgaaagaataggtttgtaagattgatc--cataactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttg |
119 |
Q |
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| T |
22964940 |
ttctggattatattttgaaagaataggtttgtaagattgatctagataactaat-actttttattggatgcagatcaatccaaatatgtattgtgttttg |
22965038 |
T |
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| Q |
120 |
ttggtgctctgacatccacatggagaagtagcttcgtaggattggtccaataactgatac |
179 |
Q |
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| T |
22965039 |
ttggtactctgac---------gagaagtagtttcgtaggattgatccaataaccgatac |
22965089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 38954978 - 38954875
Alignment:
| Q |
22 |
ttctgaattatcttttgaaagaataggtttgtaagattgatcca--taactgataattttttattgtatgcagatcaatccaaatatgtattgtgttttg |
119 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
38954978 |
ttctggattatattttgaaagaataggtttgtaagattgatccagataactaatacttttt-attggatgcagatcaatccaaatatgtattgtgttttg |
38954880 |
T |
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| Q |
120 |
ttggt |
124 |
Q |
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||||| |
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| T |
38954879 |
ttggt |
38954875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 45638500 - 45638447
Alignment:
| Q |
12 |
atatacattgttctgaattatcttttgaaagaataggtttgtaagattgatcca |
65 |
Q |
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| T |
45638500 |
atatacgttcttatgaattatcttttgaaataataggtttgtaagattgatcca |
45638447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 28022314 - 28022350
Alignment:
| Q |
143 |
agaagtagcttcgtaggattggtccaataactgatac |
179 |
Q |
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| T |
28022314 |
agaagtagctttgtaggattgatccaataactgatac |
28022350 |
T |
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