View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_129 (Length: 250)
Name: NF20151_high_129
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_129 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 34649375 - 34649551
Alignment:
| Q |
10 |
tcatttcaaaatcaaaacatcgaatcacgatacaatgactcaaacaatttgacagttatatggttcattttattttgatagagttgaagctcctaaacat |
109 |
Q |
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| T |
34649375 |
tcatttcaaaatcaaaacatcgaatcatgatacaatgactcaaacaatttgacagttatatggttcattttattttgatagagctgaagctcctaaacat |
34649474 |
T |
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| Q |
110 |
ctttcatttaattctacaaatggttctcatgttatgataactctatcattgaccgtcttcttatttaatgctaagaa |
186 |
Q |
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| T |
34649475 |
ctttcatttaattctacaaatggttctcatgttgtgataactctatcattgaccgtcttcttatttaatgctaagaa |
34649551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 34649330 - 34649362
Alignment:
| Q |
58 |
ttgacagttatatggttcattttattttgatag |
90 |
Q |
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| T |
34649330 |
ttgacagttatatggttcattttattttgatag |
34649362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 34649575 - 34649610
Alignment:
| Q |
203 |
aaacaaaacagttcactagtttgaagaataggttca |
238 |
Q |
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| T |
34649575 |
aaacaaaacagttcactagtttgaagaataagttca |
34649610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 14489786 - 14489717
Alignment:
| Q |
70 |
tggttcattttattttgatagagttgaagctcctaaacatctttcatttaattctacaaatggttctcat |
139 |
Q |
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| T |
14489786 |
tggtgcattttattttgatagagctgaagctcccaagcacctttcatataatgctacaagtggttctcat |
14489717 |
T |
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