View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_138 (Length: 244)
Name: NF20151_high_138
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_138 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 34962838 - 34962613
Alignment:
| Q |
18 |
taatgttcgtgtctctgtcagtgtctatgtcatgttcctgtatgtatcagtgtttcatcaacgtgacttaccaagtgaagaagaaaaaaccggtggtaag |
117 |
Q |
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| T |
34962838 |
taatgttcgtgtctctataaatgtctatgtcatggtcgtgtatgtatca-tgtttcatcgacgtgacttaccaagtgaagaagaaaaaaccggtggtaag |
34962740 |
T |
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| Q |
118 |
agccggatacttgctaaagaatccaaccggagcaaccttctctccactgtaaacnnnnnnncaacattagtgagtacagtaacactacagagtttttaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34962739 |
agccggatacttgctaaagaatccaaccggagcaaccttctctccactgtaaacaaaaaaacaacattagtgagtacagtaacactacagagtttttaag |
34962640 |
T |
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| Q |
218 |
tcagaacggattaaacggacctcaccc |
244 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34962639 |
tcagaacggattaaacggacctcaccc |
34962613 |
T |
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