View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_143 (Length: 241)
Name: NF20151_high_143
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_143 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33771106 - 33771327
Alignment:
| Q |
1 |
tgttacaagctgcaaacaagattgacatatgtaatcattaaaaatcacaaatattaatgtaatgtcacaagaaattaaagtacataaatattgattattt |
100 |
Q |
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| T |
33771106 |
tgttacaagctgcaaacaagattgatatatgtaatcattaaaaaacacaaacattaatgtaatgtcacaagaaattaaagtacataaatattgattattt |
33771205 |
T |
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| Q |
101 |
tataatttaagtcatcacatttaaaattagttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgatt |
200 |
Q |
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| T |
33771206 |
tataatttaagtcatcacatttaaaattagttacctgcagaagatcaccaatatttactataagagatccatgcaccggaggaacatcaatccattgatt |
33771305 |
T |
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| Q |
201 |
ttgatgaagaacttgaagaccg |
222 |
Q |
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| T |
33771306 |
ttgatgaagaacttgaagaccg |
33771327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 33761803 - 33761889
Alignment:
| Q |
131 |
ttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgattttgatgaagaacttgaa |
217 |
Q |
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| T |
33761803 |
ttacctgcataagatcaccaacgtttacaacaagagatccatgcagtggaggaacatcaacccattgattctgatgaagaacttgaa |
33761889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 33768397 - 33768487
Alignment:
| Q |
131 |
ttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgattttgatgaagaacttgaagacc |
221 |
Q |
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| T |
33768397 |
ttacctgcagaagatcgccgatgtttactacaagagatccatgaagaggaggaacgtggacccattgattctgatgaagaacttgaagacc |
33768487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 41241214 - 41241121
Alignment:
| Q |
128 |
tagttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgattttgatgaagaacttgaagacc |
221 |
Q |
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| T |
41241214 |
tagttacctgtaggatatccccaatatttacaacaagagctccatgcactggaggaacattgacccatcggttctcgtgaagaacttgaagacc |
41241121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 2047032 - 2046942
Alignment:
| Q |
131 |
ttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgattttgatgaagaacttgaagacc |
221 |
Q |
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| T |
2047032 |
ttacctgcagaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagacc |
2046942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 215
Target Start/End: Original strand, 28690516 - 28690600
Alignment:
| Q |
131 |
ttacctgcagaagatcaccaatatttactataagagatccatgcactggaggaacatcaatccattgattttgatgaagaacttg |
215 |
Q |
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| T |
28690516 |
ttacctgcaaaagatcaccaatgtttacgacaagagctccattgataggagttacatcaatccattgatcgtcatgaagaacttg |
28690600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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