View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_144 (Length: 241)
Name: NF20151_high_144
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_144 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 38564276 - 38564508
Alignment:
| Q |
9 |
caactcaaaggtgaatttggtttatgtatgcattagcatcacgtgcacccaatcacaccggtcacaagggtccctaatgaacgagtggtatatggcaaat |
108 |
Q |
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| T |
38564276 |
caactcaaaggtgaatttggtttatgtatgcattagcatcacgtgcacccaatcacaccggtcacaagggtccctaatgaacgagtggtatatggcaaat |
38564375 |
T |
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| Q |
109 |
gcgttaagcaacatcctctgcatttgtctcattcaaattcctgatcagtcagatatatattgagattatgaacgttcgcacatgtttataaacaaatgaa |
208 |
Q |
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| T |
38564376 |
gcgttaagcaacatcctctgcatttgtctcattcaaattcctgatcagtcagatatatattgagattatgaacgttcgcacatgtttataaacaaatgaa |
38564475 |
T |
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| Q |
209 |
gtattaatctttgcattttcatttactcaattt |
241 |
Q |
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| T |
38564476 |
gtattaatctttgcattttcatttactcaattt |
38564508 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 34692224 - 34692131
Alignment:
| Q |
44 |
gcatcacgtgcacccaatcacaccggtcacaagggtccctaatga--acgagtggtatatggcaaatgcgttaagcaacatcctctgcatttgt |
135 |
Q |
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| T |
34692224 |
gcatcacgtgcacatgctcacaccagtcacgagggtccctaacgagaacaagtggcatttggcaaatgctttaagcaacatcctctgcatttgt |
34692131 |
T |
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