View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_149 (Length: 239)
Name: NF20151_high_149
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_149 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 2577871 - 2577644
Alignment:
| Q |
6 |
ttgcactctatttataaatgaagaagataacaaaaacatttgacctaactaa-----------ctttatctctaataacaggtatctcaattcaatattg |
94 |
Q |
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| T |
2577871 |
ttgcgctctatttataaatgaagaagataacaaaaacatttgacctaactaagggttaactaactttatctctaataacaggtatctcaattcaatattg |
2577772 |
T |
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| Q |
95 |
caacatttcaccttatggaaacttgagtaatgttaaagtataccttggaagaccatggaagaattactcaaccacagtatacatgagaacaagaatggat |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2577771 |
taacatttcaccttatggaaacttgagtaatgttaaagtatatcttggaagaccatggaagaattactcaaccacagtttacatgagaacaagaatggat |
2577672 |
T |
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| Q |
195 |
ggttttattaatccaaatggttggttac |
222 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2577671 |
ggttttattaatccaaatggttggttac |
2577644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 172
Target Start/End: Original strand, 16605870 - 16605970
Alignment:
| Q |
72 |
acaggtatctcaattcaatattgcaacatttcaccttatggaaacttgagtaatgttaaagtataccttggaagaccatggaagaattactcaaccacag |
171 |
Q |
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||||| || ||||||||| ||||||| |||| |||| ||||||||||||| ||||||| ||| | || ||||| ||||||||||||||||| |||| |
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| T |
16605870 |
acaggaatttcaattcaaaattgcaatgtttcgccttttggaaacttgagttctgttaaaacatatttaggtagaccttggaagaattactcaacaacag |
16605969 |
T |
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| Q |
172 |
t |
172 |
Q |
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| T |
16605970 |
t |
16605970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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