View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_150 (Length: 237)
Name: NF20151_high_150
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_150 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31841445 - 31841229
Alignment:
| Q |
1 |
ttaatgaatgaatgatatgttaaacactattcacaacacaaaagaagagaccaaaattaattaatatattttgtgaacaacactcaacatggccaatgta |
100 |
Q |
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| T |
31841445 |
ttaatgaatgaatgatatgttaaacactattcacaacacaaaagaagagaccaaaattaat----atattttgtgaacaacactcaacatggccaatgta |
31841350 |
T |
|
| Q |
101 |
aaattaagtttataactttatactatcgtatatcatttactacacgtagtaatattgtacgctatgcagagcagaatgcaggacctgactcggttaattt |
200 |
Q |
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| T |
31841349 |
aaattaagtttataactttatactatcgtatatcatttactacacgtagtagtattgtacgctatgcagagcagaatgcaggacctgactcggttaattt |
31841250 |
T |
|
| Q |
201 |
atattgtacgtacgtatataa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31841249 |
atattgtacgtacgtatataa |
31841229 |
T |
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