View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_154 (Length: 236)

Name: NF20151_high_154
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_154
NF20151_high_154
[»] chr3 (8 HSPs)
chr3 (1-220)||(53513179-53513394)
chr3 (139-203)||(53523856-53523920)
chr3 (171-218)||(53509648-53509695)
chr3 (2-46)||(19758085-19758129)
chr3 (1-46)||(40991628-40991673)
chr3 (1-46)||(54128576-54128621)
chr3 (2-46)||(19737182-19737226)
chr3 (2-46)||(45486889-45486933)
[»] chr5 (2 HSPs)
chr5 (139-217)||(16609873-16609951)
chr5 (1-46)||(9235244-9235289)
[»] chr1 (7 HSPs)
chr1 (1-49)||(7762474-7762522)
chr1 (1-51)||(50257767-50257817)
chr1 (1-46)||(2544790-2544835)
chr1 (1-46)||(22175342-22175387)
chr1 (1-46)||(52532656-52532701)
chr1 (1-45)||(1290072-1290116)
chr1 (3-51)||(48865742-48865790)
[»] chr4 (2 HSPs)
chr4 (1-51)||(13805300-13805350)
chr4 (1-46)||(12443292-12443337)
[»] chr2 (2 HSPs)
chr2 (1-51)||(6219162-6219212)
chr2 (1-51)||(36366833-36366883)
[»] chr7 (2 HSPs)
chr7 (1-46)||(27893603-27893648)
chr7 (2-46)||(25891086-25891130)
[»] scaffold0245 (1 HSPs)
scaffold0245 (1-45)||(16477-16521)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 53513394 - 53513179
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaaaaccctgtatagcgagataaaacttgattgtt---gttgctgctgctgc 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   ||||||||||||||    
T  53513394 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaaaaccttgtatagcgagataaaacttgattgttgttgttgctgctgctgc 53513295  T
Q  98 atttatgctctatttccagctctccctaagnnnnnnnnnnnataaatagagtatatactttatgtagaaaatcttatagccatgtgattcaaacttatat 197  Q
    |||||||||||||||||||||||||||||             |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53513294 atttatgctctatttccagctctccctaa-------aaaaattttatagagtatatactttatgtagaaaatcttatagccatgtgattcaaacttatat 53513202  T
Q  198 tacatttcacattggaaatttca 220  Q
    |||||||||||||||||||||||    
T  53513201 tacatttcacattggaaatttca 53513179  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 53523920 - 53523856
Alignment:
Q  139 ataaatagagtatatactttatgtagaaaatcttatagccatgtgattcaaacttatattacatt 203  Q
    |||||||||||||| |  |||||| |||||| | |||||||||||||||||||||||||||||||    
T  53523920 ataaatagagtatagaacttatgttgaaaatatcatagccatgtgattcaaacttatattacatt 53523856  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 53509695 - 53509648
Alignment:
Q  171 ttatagccatgtgattcaaacttatattacatttcacattggaaattt 218  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  53509695 ttatagccatgtgattcaaacctatattacattccacattggaaattt 53509648  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 19758085 - 19758129
Alignment:
Q  2 aatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    |||||||||||| |||||| |||||||||||||||||| ||||||    
T  19758085 aatatggtttatgatagaacattatggtataatttgatccatgta 19758129  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40991628 - 40991673
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  40991628 aaatatggtttatgatagaacattatggtgtaatttgatccatgta 40991673  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 54128576 - 54128621
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  54128576 aaatatggtttatgatagaacattatggcataatttgatccatgta 54128621  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 19737182 - 19737226
Alignment:
Q  2 aatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    |||||||||||| ||| || |||||||||||||||||| ||||||    
T  19737182 aatatggtttatgataaaacattatggtataatttgatccatgta 19737226  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 45486933 - 45486889
Alignment:
Q  2 aatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    |||||||||||| |||||| ||||||| |||||||||| ||||||    
T  45486933 aatatggtttatgatagaacattatggcataatttgatccatgta 45486889  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 217
Target Start/End: Original strand, 16609873 - 16609951
Alignment:
Q  139 ataaatagagtatatactttatgtagaaaatcttatagccatgtgattcaaacttatattacatttcacattggaaatt 217  Q
    ||||||| |||||  || |||||| |||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  16609873 ataaataaagtatgaacgttatgttgaaaatattatagccatgtgattcaaacttatattacattccactttgaaaatt 16609951  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9235244 - 9235289
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  9235244 aaatatggtttatgatagaacattatggcataatttgatccatgta 9235289  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7762522 - 7762474
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaacc 49  Q
    ||||||||||||| |||||| |||||||| |||||||||| ||||||||    
T  7762522 aaatatggtttataatagaacattatggtgtaatttgatttatgtaacc 7762474  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 50257767 - 50257817
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaa 51  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  50257767 aaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaa 50257817  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2544790 - 2544835
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  2544790 aaatatggtttataatagaacattatggcataatttgatccatgta 2544835  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 22175342 - 22175387
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| ||||||||| |||||||| ||||||    
T  22175342 aaatatggtttatgatagaacattatggtagaatttgatccatgta 22175387  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 52532701 - 52532656
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  52532701 aaatatggtttatgatagaacattatggcgtaatttgattcatgta 52532656  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1290116 - 1290072
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgt 45  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||    
T  1290116 aaatatggtttatgatagaacattatggcataatttgatccatgt 1290072  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 48865790 - 48865742
Alignment:
Q  3 atatggtttattatagaaaattatggtataatttgattcatgtaaccaa 51  Q
    ||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  48865790 atatggtttatgatagaatattatggtgtaatttgatccatgtagccaa 48865742  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13805350 - 13805300
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaa 51  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||| ||||    
T  13805350 aaatatggtttatgatagaacattatgggataatttgatccatgtagccaa 13805300  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12443292 - 12443337
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||||||||| |||||| ||||||| |||||||||| ||||||    
T  12443292 aaatatggtttatgatagaacattatggcataatttgatccatgta 12443337  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6219162 - 6219212
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaa 51  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  6219162 aaatatggtttatgatagaacattatggtgtaatttgatccatgtagccaa 6219212  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36366833 - 36366883
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgtaaccaa 51  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||| ||||    
T  36366833 aaatatggtttataatagaacattatggtgtaatttgatccatgtatccaa 36366883  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 27893648 - 27893603
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||||||    
T  27893648 aaatatgttttatgatagaacattatggcataatttgattcatgta 27893603  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 25891086 - 25891130
Alignment:
Q  2 aatatggtttattatagaaaattatggtataatttgattcatgta 46  Q
    |||||||||||| |||||| |||||||| ||||||||| ||||||    
T  25891086 aatatggtttataatagaacattatggtgtaatttgatccatgta 25891130  T

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Target: scaffold0245 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16521 - 16477
Alignment:
Q  1 aaatatggtttattatagaaaattatggtataatttgattcatgt 45  Q
    ||||||||||||| |||||| ||||||| |||||||||| |||||    
T  16521 aaatatggtttatgatagaacattatggcataatttgatccatgt 16477  T

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