View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_163 (Length: 222)
Name: NF20151_high_163
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_163 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 42177592 - 42177407
Alignment:
| Q |
18 |
aacgacagaaaataatagaagatgtcaaccatcaaattcaagttgagtacttgaattggaggagggttttaactgctttatgtgatacgaaagtatcctt |
117 |
Q |
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| T |
42177592 |
aacgacagaaaataatagaagatgtcaaccatcaaattcaagttgagtacttgaattggaggagggttttaactgctttatgtgatacgaaagtatcctt |
42177493 |
T |
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| Q |
118 |
caagatgaagggaaattttatcagacaactataagaccgacacgaaaatgtaaagaaatgttgtatgggacaaagtgttggattgtaaa |
206 |
Q |
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| T |
42177492 |
caagatgaagggaaattttat---acaactataagaccgacacgaaaatgaaaagaaatgttgtatgggacaaagtgttggactgtaaa |
42177407 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 3273214 - 3273274
Alignment:
| Q |
94 |
tttatgtgatacgaaagtatccttcaagatgaaggg-aaattttatcagacaactataaga |
153 |
Q |
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| T |
3273214 |
tttatgtgatacgaaagtatcattgatgttgaaggggaaattttatcagacaactataaga |
3273274 |
T |
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