View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_171 (Length: 202)
Name: NF20151_high_171
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_171 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 76 - 202
Target Start/End: Original strand, 31616788 - 31616914
Alignment:
| Q |
76 |
ctaacattggaagagttaagcataacaggagaatcaagaaactcagcagggcttaaaccaggaggaatagaaaagtaagaagaaggagaaacagggggag |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31616788 |
ctaacattggaagagttaagcataacaggagaatcaagaaactcagcagggcttaaaccaggaggaatagaaaagtaagaagaaggagaaacagggggag |
31616887 |
T |
|
| Q |
176 |
gtgacaaaggcaaagaaggagggggtg |
202 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
31616888 |
gtgacaaaggcaaagaaggagggggtg |
31616914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 26968172 - 26968253
Alignment:
| Q |
85 |
gaagagttaagcataacaggagaatcaagaaactcagcagggcttaaaccaggaggaatagaaaagtaagaagaaggagaaa |
166 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||| | | ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
26968172 |
gaagagttaaggagaacaggagaatcaagaagttcagaaagagagaaaccaggaggtatagaaaaataagaagaaggagaaa |
26968253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University