View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_21 (Length: 506)
Name: NF20151_high_21
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_21 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 68527 - 68047
Alignment:
| Q |
16 |
tgaaattgttacttccacaaattgtctcttccataattctaccaccaatttttcctatttattattccccttcctctctcctttcctcctcgcccattta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68527 |
tgaaattgttacttccacaaattgtctcttccataattctaccaccaatttttcctctttattattccccttcctctctcctttcctcctcgcccattta |
68428 |
T |
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| Q |
116 |
ttggctggtttgttaatgagatttgacttagtattggattccttcttggattgttgtaatccttgaggcgtaattgcctcattccccaacgattatgata |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68427 |
ttggctggtttgttaatgggatttgacttagtattggattccttcttggattgttgtaatccttgaggcgtaattgcctcattccccaacgattatgata |
68328 |
T |
|
| Q |
216 |
cactctctacttcacattgaggtttttcaaatttaatggtgtttcttaatccctactgtttggttgcactcacaatgtttgtctttgagttttccacctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
68327 |
cactctctacttcacattgaggtttttcaaatttaatggtttttcttaatccctgctgtttggttgcactcacaatgtttgtcgttgagttttccacctc |
68228 |
T |
|
| Q |
316 |
caccccttttcctttatctttagatcccccattattattactcgcttcagcaaacaagtttcttccacatgagctagaactgatttccttcttgatctcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
68227 |
caccccttttcctttatctttagatcccccattattattactcacttcagcaaacaagttccttccacatgagctagaactgatttccttcttgatctcc |
68128 |
T |
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| Q |
416 |
attgatatttttgaaagagggtaagccttcatgcattgcacatatggtaattctttctcctaaattttattcagtttcatct |
497 |
Q |
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| T |
68127 |
attgatatttttgaaagaggggaagccttcatgcattgcacatatggtaattctttctcct-aatttcattcagtttcatct |
68047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Complemental strand, 76370 - 75890
Alignment:
| Q |
16 |
tgaaattgttacttccacaaattgtctcttccataattctaccaccaatttttcctatttattattccccttcctctctcctttcctcctcgcccattta |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76370 |
tgaaattgttacttccacaaattgtctcttccataattctaccaccaatttttcctctttattattccccttcctctctcctttcctcctcgcccattta |
76271 |
T |
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| Q |
116 |
ttggctggtttgttaatgagatttgacttagtattggattccttcttggattgttgtaatccttgaggcgtaattgcctcattccccaacgattatgata |
215 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
76270 |
ttggctggtttgttaatgggatttgacttagtattggattccttcttggattgttgtaatccttgaggcgtaattgcctcattccccaacgattatgata |
76171 |
T |
|
| Q |
216 |
cactctctacttcacattgaggtttttcaaatttaatggtgtttcttaatccctactgtttggttgcactcacaatgtttgtctttgagttttccacctc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
76170 |
cactctctacttcacattgaggtttttcaaatttaatggtttttcttaatccctgctgtttggttgcactcacaatgtttgtcgttgagttttccacctc |
76071 |
T |
|
| Q |
316 |
caccccttttcctttatctttagatcccccattattattactcgcttcagcaaacaagtttcttccacatgagctagaactgatttccttcttgatctcc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
76070 |
caccccttttcctttatctttagatcccccattattattactcacttcagcaaacaagttccttccacatgagctagaactgatttccttcttgatctcc |
75971 |
T |
|
| Q |
416 |
attgatatttttgaaagagggtaagccttcatgcattgcacatatggtaattctttctcctaaattttattcagtttcatct |
497 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
75970 |
attgatatttttgaaagaggggaagccttcatgcattgcacatatggtaattctttctcct-aatttcattcagtttcatct |
75890 |
T |
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