View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_26 (Length: 485)
Name: NF20151_high_26
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_26 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 44680631 - 44680155
Alignment:
| Q |
1 |
gaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactcaaaaataagcatacttgtataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44680631 |
gaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactcaaaaataagcatacttgtataa |
44680532 |
T |
|
| Q |
101 |
tcaagttttttgtttggtacaaaatgattttctgcattattggctcctcattctttaagtaaaattttgctaggactaagtaaaagatgttggtttaaca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44680531 |
tcaagttttttgtttggtacaaaatgattttctgcattattggctcctcattctttaagcaaaattttgctaggactaagtaaaagatgttggtttaaca |
44680432 |
T |
|
| Q |
201 |
caattggttttgtagcttttgcaatagaaccaacagcttttgaaaaatcctaatcaacaatgcctggaacatttctgctaaggtatctagagatggagtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44680431 |
caattggttttgtagcttttgcaatagaaccaacagcttttgaaaaatcttaatcaaaaatgcttggaacatttctgctaaggtatctagagatggagtt |
44680332 |
T |
|
| Q |
301 |
ttttcta--------tttgactaagataaaagaaagcaatgatactactaaagataagaaagcaacaacagtaaaccatatatacttagttatttactaa |
392 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44680331 |
ttttctagagtagcttttaactaagataaaagaaagcaatgatactactaaagataagaaagcaataacagtaaaccatatatacttagttatttactaa |
44680232 |
T |
|
| Q |
393 |
catagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattacgatacaactaaaaagaagagac |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
44680231 |
catagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattatgatacaactaaaaagaatagac |
44680155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44689896 - 44689653
Alignment:
| Q |
1 |
gaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactca--aaaataagcatacttgtat |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| ||||||||||| ||||| ||||||||||||| |
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|
| T |
44689896 |
gaaacatctttttagtaccatgataagttaagtttacctgattaaactgatcccttgtgagaggtatatgtctaactcaaaaaaattagcatacttgtat |
44689797 |
T |
|
| Q |
99 |
aatcaagttttttgtttggtacaaaatgattttctgcattattggctcctcattctttaagtaaaa---ttttgctaggactaagtaaaagatgttggtt |
195 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| | |||||| |||||||||||||||||||||| |
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| T |
44689796 |
aatcatcttttttgtttggtacaaaatga---cctgcattattggctattcattctttcagtaaaaatttgttgctatgactaagtaaaagatgttggtt |
44689700 |
T |
|
| Q |
196 |
taacacaattggttttgtagcttttgcaatagaaccaacagcttttg |
242 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
44689699 |
taatacaattggttttgtagcttttgcgatagaactgacagcttttg |
44689653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 469
Target Start/End: Complemental strand, 44689421 - 44689315
Alignment:
| Q |
364 |
taaaccatatata-cttagttatttactaacatagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattacgatacaactaaaaag |
462 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||||||| |||||| |
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|
| T |
44689421 |
taaaccatatataacttggttatttactaacatagtatgagcaatttaacaaaccaatgcagaggatccctttcattcaaattatgatacaacgaaaaag |
44689322 |
T |
|
| Q |
463 |
aagagac |
469 |
Q |
| |
|
|| |||| |
|
|
| T |
44689321 |
aatagac |
44689315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 41983676 - 41983856
Alignment:
| Q |
1 |
gaaacatctttttagtaccatgataagttaagtttacctgattaaattgagccctggtgagagttatgtgtctaactcaaaaataagcatacttgtataa |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| | ||| || ||||||||||||||| ||||| ||||||| ||||| |||||| |||||||||||||| |
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|
| T |
41983676 |
gaaatatctttttagtaccacgataagttatgcttatctaattaaattgagccctcgtgagg--tatgtgtttaacttaaaaatttgcatacttgtataa |
41983773 |
T |
|
| Q |
101 |
tcaagttttttgtttggtacaaaatgattttctgcattattggctcctcattctttaagtaaaattttgctaggactaagtaaaag |
186 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||||| | |||||||||||| |
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|
| T |
41983774 |
tcaagttttttgtttggtacaaaatgactttctctatcattggctcctc---ctttaagtaaaattttgccattactaagtaaaag |
41983856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 41979687 - 41979742
Alignment:
| Q |
388 |
actaacatagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaat |
444 |
Q |
| |
|
|||||||||||| || ||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatccc-ttcattcaaat |
41979742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 453
Target Start/End: Original strand, 18990683 - 18990749
Alignment:
| Q |
386 |
ttactaacatagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattacgataca |
453 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| ||| | ||||||||||||| |||||| |
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|
| T |
18990683 |
ttactaacatagtacaaacaatttaataaaccaatgcacacaatcac-ttcattcaaattatgataca |
18990749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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