View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_28 (Length: 470)
Name: NF20151_high_28
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 17343194 - 17343646
Alignment:
| Q |
1 |
gaatagaaagagttagatttgacacttggtagaaaagcatattttcatatgtttgttcatttaacacattaaaaa-tgttataaatgatggaatgagaac |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17343194 |
gaataaaaagagttagatttgacacttggtagaaaagcatcttttcatatgtttgttcatttaacacattaaaaaatgttataaatgatggaatgagaac |
17343293 |
T |
|
| Q |
100 |
aataattttactaaattaaccttattgttattgatctattttattcaaaatttaacttaaatatatcaattttctttgattcaattttgcatatattcgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17343294 |
aataattttactaaattaaccttatt---attgatctattttatttaaaatttaactcaaatatatcaattttctttgattcaattttgcatatattcgt |
17343390 |
T |
|
| Q |
200 |
cacatagtaaatatgaactattatcgtaaatgtaaagtaaaacgaatggaattgagatatttgtgatataaactaattcaagtacaattcaaaaactagt |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17343391 |
cacataataaatatgaactattatcgtaaatgtaaagtaaaacgaatgatattgagatatttgtgatatatactaattcaagtacaattcaaaaactagt |
17343490 |
T |
|
| Q |
300 |
aatcttaaattaaaagggacgtctattttaagagaa-nnnnnnnncttttaattgtatggctcattgttggattgaagcacggttttacactagacatag |
398 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17343491 |
aatcttaaattaaaagtgacctctattttaagagaatttttttttcttttaattgtatggctcattgttggattgaagcacgattttacactagacatag |
17343590 |
T |
|
| Q |
399 |
agatgagtaggacactacatgttatggctgcaaatacaaaggagaattcacaaatt |
454 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17343591 |
agatgagtaggacactgcatgttatggctgcaaatacaaaggagaattcacaaatt |
17343646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University