View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_35 (Length: 446)
Name: NF20151_high_35
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 167 - 437
Target Start/End: Complemental strand, 33931969 - 33931699
Alignment:
| Q |
167 |
tttggctttgtttctttgttgtgattcaagtttgacattgtactcataattgataatgccaacatctacttgacttctataacgcatgtgtctaatcaag |
266 |
Q |
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| T |
33931969 |
tttggctttgtttctttgttgtgattcaagtttgacattgtactcataattgataatgccaacatctacttgacttctataacgcatgtgtctaatcaag |
33931870 |
T |
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| Q |
267 |
agaaagatgaagataactcagatgtttccgagagagattgtggttcttatttgttcaaaggggtggttttcataagagaagggcccttctttgttctcat |
366 |
Q |
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| T |
33931869 |
agaaagatgaagataactcagatgttttcgagagagattgtggttcttatttgttcaaaggggtggttttcataagagaagggcccttctttgttctcat |
33931770 |
T |
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| Q |
367 |
acagaatattagggatttcaaaaattgaagtgatacttttatgtggatatagattaaatcattattacttc |
437 |
Q |
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| T |
33931769 |
acagaattttagggatttcaaaaattgaagtgatacttttatgtggatatagattaaataattattacttc |
33931699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 33933317 - 33933250
Alignment:
| Q |
17 |
atctttctcttaaacgcacagtggtggtggtgaaacgtcaaaacaaacacatactgcgctcttttgta |
84 |
Q |
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| T |
33933317 |
atctttctcttaaacgcacagtggtggtggtgaaacgtcaaaacaaacatatactgcgctcttttgta |
33933250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 33933175 - 33933129
Alignment:
| Q |
89 |
atgatgattcacgtaatttttttgtttgaaggatgatgcttcaagta |
135 |
Q |
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| T |
33933175 |
atgatgattcacgtaatttttttgtttaaaggatgatgcttcaagta |
33933129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 22179216 - 22179264
Alignment:
| Q |
23 |
ctcttaaacgcacagtggtggtggtgaaacgtcaaaacaaacacatact |
71 |
Q |
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| T |
22179216 |
ctctcaaacgcacagtggcagtggtgaaacggcaaaacaaacacatact |
22179264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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