View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_36 (Length: 441)
Name: NF20151_high_36
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Complemental strand, 43664092 - 43663681
Alignment:
| Q |
12 |
tataaaatagcacaacaaatatatgattggtggtattgcagctctagtgccgtgtgaataatatcaaaaattaatttcacccttgattgctaactggaga |
111 |
Q |
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| T |
43664092 |
tataaaatagcacaagaaatatatgattggtggtattgcagctctagtgccgtgtgaataatatcaaaaattaatttcacccttgattgctaactggaga |
43663993 |
T |
|
| Q |
112 |
ccaagnnnnnnnnnnnnnnnntaatttagaaagtggcatgctttatcgagtcaatggagcataaatataatgaatggaagttgaggatgaaacccactaa |
211 |
Q |
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| T |
43663992 |
ccaagaaaaaacaaaagaaaataatttagaaagtggcatgctttatcgagtcaatggagcataaatataatgaatggaagttgaggatgaaacccactaa |
43663893 |
T |
|
| Q |
212 |
ttaattaatcaatttcagataaaataattgtaccaaaaaggtaaacgttgtagcatagtagctcacgaagtgtgtatcatttcattgctaacactgacta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43663892 |
ttaattaatcaatttcagataaaataattgtaccaaaaaggtaaacgttgtagcatagtagctcacgaagtgtgtatcatttcattgctaacaccgacta |
43663793 |
T |
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| Q |
312 |
accacactatagtggaccgctgaaatttgacttgccaattaaagcttagcagcacattaatatatgctatgtttgcaacatagtaatgtggtaaatgcat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43663792 |
accacactatagtggaccgctgaaatttgacttgccaattaaagcttggcagcacattaatatatgctatgtttgcaacatagtaatgtggtaaatgcat |
43663693 |
T |
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| Q |
412 |
gtgcgttagaca |
423 |
Q |
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| T |
43663692 |
gtgcgttagaca |
43663681 |
T |
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