View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_47 (Length: 415)
Name: NF20151_high_47
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 394
Target Start/End: Original strand, 37627599 - 37627969
Alignment:
| Q |
21 |
agcgaaatggttcaatagcggatatgtgccaagttttaagacatatttggataatggaacaatttctgttggatcatgcatggcattggtgcattctact |
120 |
Q |
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| T |
37627599 |
agcgaaatggttcaatagcggatatgtgccaagttttaagacgtatttggataatggggtgatttcggttggatcatgcatggcattggtgcattctact |
37627698 |
T |
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| Q |
121 |
ttcctcattggagatggtctgtcaaaggaaactatttccatgatgatgaagccatatcctagactattctcttgttcaggagaaattcttcgactatggg |
220 |
Q |
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| T |
37627699 |
ttcctcattggtgatggtctctcaaaggaaactatttccatgatga---agcaatatcctagactattctcttgttcaggagaaattcttcgactatggg |
37627795 |
T |
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| Q |
221 |
atgacttgggaacttcaacggtatctctctaaccgctactaaaaaatagttaaatagacctcacttatatctttttactagtaatcatgttagatcaata |
320 |
Q |
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| T |
37627796 |
atgacttgggaacttcaacggtatctctctaaccgctactaaaaaatagttaaatagacctcacttatatctttttactagtaatcatgttagatcaata |
37627895 |
T |
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| Q |
321 |
aatatattactaatttttatgtctaggaggaacaagaaagaggggataatgcatgcagcatacaatgcttgatg |
394 |
Q |
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| T |
37627896 |
aatatattactaatttttatgtctaggaggaacaagaaagaggggataatgcttgcagcatacaatgcttgatg |
37627969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 25 - 266
Target Start/End: Original strand, 37619194 - 37619435
Alignment:
| Q |
25 |
aaatggttcaatagcggatatgtgccaagttttaagacatatttggataatggaacaatttctgttggatcatgcatggcattggtgcattctactttcc |
124 |
Q |
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| T |
37619194 |
aaatggttcaataatggatgtgtgccaaattttaagacatatttggataatggagtaatttctgctggatcatgcatggccttggtgcatgctactttcc |
37619293 |
T |
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| Q |
125 |
tcattggagatggtctgtcaaaggaaactatttccatgatgatgaagccatatcctagactattctcttgttcaggagaaattcttcgactatgggatga |
224 |
Q |
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| T |
37619294 |
tcattggtgatggtctctcaaaggaaactatgtccataatgatgaagtcatatcccagactcttcacttgctccggcgaaattcttcgactatgggatga |
37619393 |
T |
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| Q |
225 |
cttgggaacttcaacggtatctctctaaccgctactaaaaaa |
266 |
Q |
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| T |
37619394 |
cttaggaacttcaacggtatcactttgatccctactaaaaaa |
37619435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 406
Target Start/End: Original strand, 37619597 - 37619681
Alignment:
| Q |
322 |
atatattactaatttttatgtctaggaggaacaagaaagaggggataatgcatgcagcatacaatgcttgatgggagagaataat |
406 |
Q |
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|||| ||||||||||| |||| ||||||||||||||||||| |||||||| | || ||||||||| ||||| ||||||||||| |
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| T |
37619597 |
atatcttactaattttgatgttcaggaggaacaagaaagaggagataatgctagtagtatacaatgcatgatgagagagaataat |
37619681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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