View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_48 (Length: 415)
Name: NF20151_high_48
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 2463440 - 2463291
Alignment:
| Q |
226 |
ataaccagaaagttcatttattcttgggaagtcttgataatgagcaacatgccatatcacaacttctcaaaaatcacgttttacagcagaaaaggagagg |
325 |
Q |
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| T |
2463440 |
ataaccagaaagttcatttattcttgggaagtcttgataatgagcaacatgccatatcacaacttcccaagaatcacgttttacagcagaaaaggagagg |
2463341 |
T |
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| Q |
326 |
attgataataccatgcaggaatctggagcagcattccattcaagggtggt |
375 |
Q |
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| T |
2463340 |
atagataataccatgcaggaatctggagcagcattccattcaagggtggt |
2463291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 2463701 - 2463607
Alignment:
| Q |
55 |
tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgacagcctttccttttcaatttctcttctc |
149 |
Q |
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| T |
2463701 |
tttcatacctcaaataataacttcatggatcttgttccactagttcatcttgtctctctcagtttgactgcctttccttttcaatttctcttctc |
2463607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 2463774 - 2463724
Alignment:
| Q |
10 |
ctacccatattcccaattttcctaatttc-aacccaaacattaaaatttca |
59 |
Q |
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| T |
2463774 |
ctacccaaattcccaattttcctaatttcaaaccctaacattaaaatttca |
2463724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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