View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_49 (Length: 415)
Name: NF20151_high_49
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 217 - 401
Target Start/End: Original strand, 3322048 - 3322232
Alignment:
| Q |
217 |
ccaataaaagagtataaatatattatctatgttattgttatatttgtctcataatgttgaacaagtttttgaaaatcattaatagctgatttgttgtcac |
316 |
Q |
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| T |
3322048 |
ccaataaaagagtataaatatattatctatgttattgttatatttgtctcataatgttgaacaagtttttgaaaattattaatagttgatttgttgtcac |
3322147 |
T |
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| Q |
317 |
aaaaactttaaacctttatactttatattcaagtcaaacttgagtgaacgtataataattagactctttctttttctatcttatt |
401 |
Q |
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| T |
3322148 |
aaaaactttaagcctttatactttgtattcaagtgaaacttgagtgaacgtataataattagactctttctttttctattttatt |
3322232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 3321852 - 3321984
Alignment:
| Q |
17 |
agtagtaaagccaagtatttctttaatcctacacatgaaacatggcttgaaggttatggtgnnnnnnncaagtatttgaggatctaattaggagatattt |
116 |
Q |
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| T |
3321852 |
agtagtaaagccaagtatttctttaatcctacacatgaaacatggcttgaaggttatggtgaaaaaaataagtatttgaggatcta---aggagatattt |
3321948 |
T |
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| Q |
117 |
tgaaaataactaaattgtgttcagaaactacatgca |
152 |
Q |
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| T |
3321949 |
tgaaaataactaaattgtgttctgaaactacatgca |
3321984 |
T |
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