View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20151_high_51 (Length: 413)
Name: NF20151_high_51
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17514574 - 17514458
Alignment:
| Q |
1 |
ttggattcagcaagtactcatatttttcatagatactttttctttttgggaggaagatttgatgttggtggttatatgatcccttagaggtattctgaaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| ||||| |
|
|
| T |
17514574 |
ttggattcaggaagtactcatatttttcatagatactttttctttttgggaggaatatttgatgttggtggttatatgatccctcaaaggtattatgaaa |
17514475 |
T |
|
| Q |
101 |
ttttctgccaaaacaac |
117 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
17514474 |
ttttgtgccaaaacaac |
17514458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 17514242 - 17514172
Alignment:
| Q |
331 |
tctttacatgaacatgggaaatttcagtatttacatataattttaattaaatttacgagtaatcgaatatt |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
17514242 |
tctttacatgaacatgggaaatttcagtatttacatataatttgaattaaatttaggagtaatcgaatatt |
17514172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 190 - 305
Target Start/End: Complemental strand, 17514385 - 17514271
Alignment:
| Q |
190 |
ctctcattatatatatgaagattctgtctaatcacaattcatatnnnnnnnngggcaatttctacccatggatgtatatgggagatatgtgaagtttttg |
289 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17514385 |
ctctaattatatatatgaagattttgtctagtcacacttcaaataaaaaga-gggcaatttctacccatggatgtatatgggagatatgtgaagattttg |
17514287 |
T |
|
| Q |
290 |
agtaaagcatgaaaaa |
305 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
17514286 |
agtaaagcatgaaaaa |
17514271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 16856300 - 16856181
Alignment:
| Q |
1 |
ttggattcagcaagtactcatatttttcatagatact--ttttctttttgggaggaagatttgatgttggtggttatatgatccc-ttagaggtattctg |
97 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||| ||||||||| | |||||| ||||| |||||||||||||||| ||| ||||||| || |
|
|
| T |
16856300 |
ttggattcaggtattactcatatttttcatagatactagttttttttttgggatggagattttatgttagtggttatatgatccccttaaaggtattatg |
16856201 |
T |
|
| Q |
98 |
aaattttctgccaaaacaac |
117 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16856200 |
aaattttctgccaaaacaac |
16856181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17529724 - 17529612
Alignment:
| Q |
1 |
ttggattcagcaagtactcatatttttcatagatactttttctttttgggaggaagatttgatgttggtggttatatgatcccttagaggtattctgaaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| ||| ||| | ||||||||||| |||||||||||||||| ||||||| | ||||| |
|
|
| T |
17529724 |
ttggattcaggaagtactcatatttttcattgatacttttttttt---ggatggtgatttgatgttagtggttatatgatcccccagaggta-tatgaaa |
17529629 |
T |
|
| Q |
101 |
ttttctgccaaaacaac |
117 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
17529628 |
ttttgtgccaaaacaac |
17529612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 347 - 385
Target Start/End: Complemental strand, 16855952 - 16855914
Alignment:
| Q |
347 |
ggaaatttcagtatttacatataattttaattaaattta |
385 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16855952 |
ggaaattttagtatttacatataattttaattaaattta |
16855914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Complemental strand, 17529417 - 17529364
Alignment:
| Q |
331 |
tctttacatgaacatgggaaatttcagtatttacatataattttaattaaattt |
384 |
Q |
| |
|
|||||||||||||| ||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
17529417 |
tctttacatgaacaagggccatttatgtattcacatataattttaattaaattt |
17529364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University