View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20151_high_53 (Length: 406)

Name: NF20151_high_53
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20151_high_53
NF20151_high_53
[»] chr2 (2 HSPs)
chr2 (13-391)||(44299273-44299651)
chr2 (51-134)||(20989855-20989939)
[»] chr6 (2 HSPs)
chr6 (41-167)||(5972099-5972226)
chr6 (41-167)||(8711908-8712035)
[»] chr8 (2 HSPs)
chr8 (41-152)||(27784966-27785077)
chr8 (41-152)||(24628478-24628590)
[»] scaffold0025 (1 HSPs)
scaffold0025 (41-167)||(154268-154395)
[»] chr1 (3 HSPs)
chr1 (41-134)||(25843310-25843404)
chr1 (41-140)||(25870406-25870506)
chr1 (293-353)||(42506231-42506292)
[»] chr5 (3 HSPs)
chr5 (41-141)||(10978869-10978970)
chr5 (41-152)||(6997616-6997728)
chr5 (41-134)||(464131-464225)
[»] chr4 (4 HSPs)
chr4 (41-134)||(2387898-2387992)
chr4 (99-152)||(39039107-39039160)
chr4 (78-152)||(8866866-8866940)
chr4 (297-353)||(1607734-1607791)
[»] chr7 (2 HSPs)
chr7 (41-152)||(16885751-16885863)
chr7 (104-196)||(21762691-21762786)


Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 44299273 - 44299651
Alignment:
Q  13 aaaatctaacaattcaatnnnnnnnnctaatgcaatatgataataaacatttacttgatttgagattgtaattggtgttgactgatttaaacttggagaa 112  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44299273 aaaatctaacaattcaataaaaaaaactaatgcaatatgataataaacatttacttgatttgagattgtaattggtgttgactgatttaaacttggagaa 44299372  T
Q  113 aatcgcagcaatggagatcaaaactgcaacaatgaagtttgagaaatccctatgttcttatgtttttgtaacagaacccaatgtcgtgagtgaactcaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44299373 aatcgcagcaatggagatcaaaactgcaacaatgaagtttgagaaatccctatgttcttatgtttttgtaacagaacccaatgtcgtgagtgaactcaca 44299472  T
Q  213 ttgacttaatttagatagtcaatgggacttatgcgtgacttatgtcacgttgtgtttaacacacttgagttaacatacagagagatattttgggtagttc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44299473 ttgacttaatttagatagtcaatgggacttatgcgtgacttatgtcacgttgtgtttaacacacttgagttaacatacagagagatattttgggtagttc 44299572  T
Q  313 ggttggagtgagtaaaacttgatgggagaagagcaactttcattttcattaataatcaagttattttgagtcacatttt 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44299573 ggttggagtgagtaaaacttgatgggagaagagcaactttcattttcattaataatcaagttattttgagtcacatttt 44299651  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 20989855 - 20989939
Alignment:
Q  51 gataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaa 134  Q
    |||||||| || ||||||||||| | |||||||||||||||||| ||| ||||  ||||||||||||||| |||| |||||||||    
T  20989855 gataataagcacttacttgattttgtgattgtaattggtgttgaatgacttaaggttggagaaaatcgcaacaatagagatcaaa 20989939  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 5972226 - 5972099
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||||| || ||| ||||||| | |||||||||||| ||||| ||  ||||| ||||||||||||||| || || || |||| |||||    
T  5972226 aatgcaataggataataagcacttatttgattttgtgattgtaattggcgttgaatggcttaaagttggagaaaatcgcaacattgaagctcaatactgc 5972127  T
Q  140 aacaatgaagtttgagaaatccctatgt 167  Q
    ||||||| |||||  ||||| |||||||    
T  5972126 aacaatggagttttggaaattcctatgt 5972099  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 8711908 - 8712035
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||||| || ||| ||||||| | |||||||||||| ||||| ||  ||||  ||||||||||||||| || || || |||| |||||    
T  8711908 aatgcaataggataataagcacttatttgattttgtgattgtaattggcgttgaatgtcttaatgttggagaaaatcgcaacattgaagctcaatactgc 8712007  T
Q  140 aacaatgaagtttgagaaatccctatgt 167  Q
    ||||||| |||||  ||||| |||||||    
T  8712008 aacaatggagttttggaaattcctatgt 8712035  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 27784966 - 27785077
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    |||||||||  ||||||| || ||||||||||| | |||||||||||  ||||| ||| ||||  ||||||||||||||| ||||| || ||||||| ||    
T  27784966 aatgcaatagaataataagcacttacttgattttgtgattgtaattgc-gttgaatgacttaaggttggagaaaatcgcaacaatgcagctcaaaaccgc 27785064  T
Q  140 aacaatgaagttt 152  Q
    |||||||||||||    
T  27785065 aacaatgaagttt 27785077  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 24628590 - 24628478
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||||| || || ||| |||| | ||||| |||||| ||||| ||  |||| |||||| |||||| || |||||||  |||| |||||    
T  24628590 aatgcaataggataataagcacttgcttaattttgggattgcaattggcgttgaatggcttaagcttggacaaaatctcaacaatggaactcaacactgc 24628491  T
Q  140 aacaatgaagttt 152  Q
    ||||||| |||||    
T  24628490 aacaatggagttt 24628478  T

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Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 154268 - 154395
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||| | || ||||||||||| | | ||||||||||  |||| ||| |||| |||||||||||||| | | |||||  ||||||||||    
T  154268 aatgcaataggataatgagcacttacttgattttgtgtttgtaattggcattgaatgacttaagcttggagaaaatcgtacctatggaactcaaaactgc 154367  T
Q  140 aacaatgaagtttgagaaatccctatgt 167  Q
    ||||||| |||||  ||||| |||||||    
T  154368 aacaatggagttttggaaattcctatgt 154395  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 25843404 - 25843310
Alignment:
Q  41 aatgcaatatgataataaacatttacttgatttga-gattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaa 134  Q
    ||||||||| |||||||| || ||||||||||| | | |||||||||| ||||| ||| ||||| ||||||||||||||| ||||  ||||||||    
T  25843404 aatgcaataggataataagcacttacttgattttatgtttgtaattggcgttgaatgacttaaagttggagaaaatcgcaacaataaagatcaaa 25843310  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 25870506 - 25870406
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||||| || |||||| |||| | | |||||||||| ||||| ||| ||||  ||||||||||||||| ||||  |||||||| ||||    
T  25870506 aatgcaataggataataagcacttacttaattttgtgtttgtaattggcgttgaatgacttaaggttggagaaaatcgcaacaataaagatcaaatctgc 25870407  T
Q  140 a 140  Q
    |    
T  25870406 a 25870406  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 42506292 - 42506231
Alignment:
Q  293 agagatattttgggtagttcggttgg-agtgagtaaaacttgatgggagaagagcaactttc 353  Q
    |||| ||||||||||||||  ||||| | ||||| |||||||||||||||||||||| ||||    
T  42506292 agaggtattttgggtagtttagttgggaatgagtgaaacttgatgggagaagagcaattttc 42506231  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 141
Target Start/End: Original strand, 10978869 - 10978970
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| |||||||| || ||||||||||| | |||||||||||  ||||| ||  |||| |||||||||||| ||| |||||||| ||||||| ||    
T  10978869 aatgcaataggataataagcacttacttgattttgtgattgtaattgacgttgaatggcttaagcttggagaaaattgcaacaatggagctcaaaaccgc 10978968  T
Q  140 aa 141  Q
    ||    
T  10978969 aa 10978970  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 6997728 - 6997616
Alignment:
Q  41 aatgcaatatgataataaacatttacttgat-ttgagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    ||||||||| ||||||||||| ||| ||||| ||| | |||| ||||  | ||| ||  |||| |||||||||||| ||| ||||| ||||||||| |||    
T  6997728 aatgcaataggataataaacacttatttgatcttggggttgtgattgacgctgattggcttaagcttggagaaaattgcaacaatgaagatcaaaattgc 6997629  T
Q  140 aacaatgaagttt 152  Q
    ||||||| |||||    
T  6997628 aacaatggagttt 6997616  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 464131 - 464225
Alignment:
Q  41 aatgcaatatgataataaacatttacttgat-ttgagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaa 134  Q
    |||||||||| |||||||||| ||||||||| ||| | |||||||||  | |||  || ||||  |||||||||||||||  |||||||||||||    
T  464131 aatgcaatatcataataaacacttacttgatcttggggttgtaattgacgctgatcgacttaagtttggagaaaatcgcaagaatggagatcaaa 464225  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 2387992 - 2387898
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaa 134  Q
    ||||||||| |||| ||| || ||||||||||| | | |||||||||| ||||| ||| ||||  ||||||||||||||| ||||| ||||||||    
T  2387992 aatgcaataggatagtaagcacttacttgattttgtgtttgtaattggcgttgaatgacttaaggttggagaaaatcgcaacaatgaagatcaaa 2387898  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 39039160 - 39039107
Alignment:
Q  99 ttaaacttggagaaaatcgcagcaatggagatcaaaactgcaacaatgaagttt 152  Q
    |||| |||||||||||||||| |||||||||||||||  ||||||||| |||||    
T  39039160 ttaagcttggagaaaatcgcaacaatggagatcaaaatcgcaacaatggagttt 39039107  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 8866940 - 8866866
Alignment:
Q  78 ttgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgcaacaatgaagttt 152  Q
    ||||||||||| | || ||| |||| |||||||||||||||| | |||||  ||||||| ||||||||| |||||    
T  8866940 ttgtaattggtttggaatgacttaagcttggagaaaatcgcacctatggaactcaaaaccgcaacaatggagttt 8866866  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 1607734 - 1607791
Alignment:
Q  297 atattttgggtagttcggttgg-agtgagtaaaacttgatgggagaagagcaactttc 353  Q
    |||||||||| ||||| ||||| |||||||||||| ||||||||||| ||||| ||||    
T  1607734 atattttgggaagttcagttgggagtgagtaaaacgtgatgggagaaaagcaattttc 1607791  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 16885863 - 16885751
Alignment:
Q  41 aatgcaatatgataataaacatttacttgattt-gagattgtaattggtgttgactgatttaaacttggagaaaatcgcagcaatggagatcaaaactgc 139  Q
    |||| |||| ||||||||||| ||||||||||| | |||||||||||| ||| | ||  |||| | |||| ||||||| | ||||||| ||||||||  |    
T  16885863 aatgtaataggataataaacacttacttgattttgggattgtaattggcgtttaatggcttaagcatggacaaaatcgaaacaatggaaatcaaaaccac 16885764  T
Q  140 aacaatgaagttt 152  Q
    ||||||| |||||    
T  16885763 aacaatgtagttt 16885751  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 21762786 - 21762691
Alignment:
Q  104 cttggagaaaatcgcagcaatggagatcaaaactgcaacaatgaagtttgagaaatcccta-tgttc--ttatgtttttgtaacagaacccaatgt 196  Q
    |||||||||||||| | |||||  ||||||||| ||||||||| |||||  ||||| |||| |||||  |||||||||| ||||| || |||||||    
T  21762786 cttggagaaaatcggaacaatgatgatcaaaaccgcaacaatggagttttggaaattcctattgttctattatgtttttataacaaaatccaatgt 21762691  T

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