View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_54 (Length: 401)
Name: NF20151_high_54
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 14398511 - 14398146
Alignment:
| Q |
13 |
aaaatgtcttctagttaaataagaaattaaccctatttacattcacattattgtgaatcatcatcagccatcaatttacagtatactataatctctttct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398511 |
aaaatgtcttctagttaaataagaaattaaccctatttacattcacattattgtgaatcatcatcagccatcaatttacagtatactataatctctttct |
14398412 |
T |
|
| Q |
113 |
actcgcaacaccatgcttccccttccgtaaactttattagattacaatgtcgtttgcaatgcatccggatccggtccctcggccaatggaacttaaaaat |
212 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14398411 |
actcgcagcaccatgcttccccttccgtgaactttattagattacaatgtcgtttgcaatgcatccgg------tccctcggccaatggaacttaaaaaa |
14398318 |
T |
|
| Q |
213 |
tactcctgaaagggacaacaaaacaataatcattaattaggcttattgttcaataaaaatccacattctattgaacaaacagggtcaaaaacttgtttta |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14398317 |
tactcctgaaagggacaacaaaacaataatcattaattaggcttattgttcaataaaaatccacattctattgaacaaacagggtcaaaaacttttttta |
14398218 |
T |
|
| Q |
313 |
gttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaagaattgacctctagtggaagt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14398217 |
gttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaagaattgacctctagtggaagt |
14398146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 14392278 - 14392147
Alignment:
| Q |
39 |
ttaaccctatttacattcacattattgtgaatcatcatcagccatcaatttacagtatactataatctctttctactcgcaacaccatgcttccccttcc |
138 |
Q |
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|||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| ||| | |
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| T |
14392278 |
ttaaacctatttacattcacattattctgaatcaccatcagccatcaaattacagtatactataatttctttctactcgcagcaccatgcttgcccgcct |
14392179 |
T |
|
| Q |
139 |
gtaaactttattagattacaatgtcgtttgca |
170 |
Q |
| |
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||| |||||||| ||||||||||||||||| |
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|
| T |
14392178 |
ataacatttattagtttacaatgtcgtttgca |
14392147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 374
Target Start/End: Complemental strand, 14392106 - 14392001
Alignment:
| Q |
268 |
aaaatccacattctattgaacaaac--agggtcaaaaacttgttttagttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaaga |
365 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||| || ||| | |
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| T |
14392106 |
aaaatccacattctattgaataaaccaagggtcaaaaactt---ttaattgcatttttatttaatacagatgtggtagtaagaggaaatcacttgcaaca |
14392010 |
T |
|
| Q |
366 |
attgacctc |
374 |
Q |
| |
|
||||||||| |
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|
| T |
14392009 |
attgacctc |
14392001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 378
Target Start/End: Original strand, 13883228 - 13883412
Alignment:
| Q |
194 |
gccaatggaacttaaaaattactcctgaaagggacaacaaaacaataatcattaattaggcttattgttcaat-aaaaatccacattctattgaacaaac |
292 |
Q |
| |
|
||||||| ||||| | || ||||| ||||||||||| |||||||||| ||| |||||||| |||||||| | |||||| ||||||| ||||||||||| |
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|
| T |
13883228 |
gccaatgaaacttgataaatactcttgaaagggacagcaaaacaatagccatggattaggctaattgttcattaaaaaattcacattcaattgaacaaac |
13883327 |
T |
|
| Q |
293 |
--agggtcaaaaacttgttttagttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaagaattgacctctagt |
378 |
Q |
| |
|
| || || |||| |||||| ||||||| ||||||| ||||| |||||| |||| ||||||| |||||| |||||| ||||||| |
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|
| T |
13883328 |
taatggacataaac---atttagtcgcatttttatttaatatagatatggtagcaagaagaaatcaattacaacaattgatctctagt |
13883412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 384
Target Start/End: Original strand, 13852793 - 13852976
Alignment:
| Q |
203 |
acttaaaaattactcctgaaagggacaac-aaaacaataatcattaattaggcttattgttcaat-aaaaatccacattctattgaacaaac--agggtc |
298 |
Q |
| |
|
|||| |||| ||||||| ||||||||| | ||||||||||||||| |||||||| |||||||| | |||||| ||||||| ||| ||||||| |||| | |
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|
| T |
13852793 |
acttgaaaaatactcctcaaagggacagccaaaacaataatcattgattaggctaattgttcattaaaaaattcacattcaattaaacaaacgaagggac |
13852892 |
T |
|
| Q |
299 |
aaaaacttgttttag-ttgcattttaatttaatctagatgtggtagtaagaggaaatcagttacaagaattgacctctagtggaagt |
384 |
Q |
| |
|
||||| ||||||| ||||||||| |||||| ||||| | |||| |||||| | ||| |||||| ||||||||| ||||| |||| |
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|
| T |
13852893 |
aaaaa---gttttagtttgcatttttgtttaatttagatattgtagcaagaggtattcaattacaacaattgacctatagtgaaagt |
13852976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 16021224 - 16021305
Alignment:
| Q |
27 |
ttaaataagaaattaaccctatttacattcacattattgtgaatcatcatcagccatcaatttacagtatactataatctct |
108 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||||||||| |||| |||| ||||||| |||| ||||||| |||||||| |
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|
| T |
16021224 |
ttaaatgacaaattacacctatttacattcacattattgtgagtcataatcaaccatcaaattacggtatactgtaatctct |
16021305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 16021450 - 16021530
Alignment:
| Q |
213 |
tactcctgaaagggacaacaaaacaataatcattaattaggcttattgttcaat-aaaaatccacattctattgaacaaac |
292 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| |||| ||| |||||||| | |||||| ||||||| || |||||||| |
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|
| T |
16021450 |
tactcctgaaagggacatccaaacaataatcattgattaagctaattgttcattaaaaaattcacattccatggaacaaac |
16021530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 13852673 - 13852779
Alignment:
| Q |
46 |
tatttacattcacattattgtgaatcatcatcagccatcaatttacagtatactataatctctttctactcgcaacaccatgcttccccttccgtaaact |
145 |
Q |
| |
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||||| |||||||||||||||| | |||||| || | | || |||||||||||| |||||||||||| ||| |||||||| |||||||| ||| || |
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| T |
13852673 |
tatttgcattcacattattgtgcgttttcatcaagcagctaattccagtatactatagtctctttctactagcagcaccatgcctccccttctataacct |
13852772 |
T |
|
| Q |
146 |
ttattag |
152 |
Q |
| |
|
||||||| |
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|
| T |
13852773 |
ttattag |
13852779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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