View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20151_high_55 (Length: 401)
Name: NF20151_high_55
Description: NF20151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20151_high_55 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 29074579 - 29074953
Alignment:
| Q |
18 |
cataatggagaatgcgcttgagagcaaacatgtgttctgtgttgggtgcatgcatgtggagaccatgtggagataannnnnnnataataagatgtgtatt |
117 |
Q |
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| T |
29074579 |
cataatggagaatgcgcttgagagcaagcatgtgttctgtgttgggagcatgcatgtggagaccgtgtggagataatttttttataataagatgtgtatt |
29074678 |
T |
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| Q |
118 |
taccacatttataatataaaccgtttaatcttaatctaacgatttgtaaagtgtcgattgcatgagtgcaagattcctgatagctggtaatcaggtccgt |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
29074679 |
taccacatttgtaatataaaccgtttaatcttaatctaacaacttgtaaagtgtcgattgcatgagtgcaagatttctgatagcttgtaatcaggtccgt |
29074778 |
T |
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| Q |
218 |
gcaaattctcttctaatgctttcttcaatccctttcaaaagtattttgctgaagttattttatagaccattcacaaaagatggagaaattttgaaaacaa |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29074779 |
gcaaattctcttctaatgctttcttcaatccctttcaaaagtattttgctgaagttattttatagaccattcacaaaagatggagaaatttggaaaacaa |
29074878 |
T |
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| Q |
318 |
taaccacattgatagagtaagaattaaacgtttcttttgtttgtgttaggcagttttaatttggctgatattctt |
392 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29074879 |
taactacattgatagagtaagaattaaacgtttcttttgtttgtgttaggcagttttaatttggctgattttctt |
29074953 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 1546413 - 1546475
Alignment:
| Q |
18 |
cataatggagaatgcgcttgagagcaaacatgtgttctgtgttgggtgcatgcatgtggagac |
80 |
Q |
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| T |
1546413 |
cataatggagaatgtgcttaagagcaaccatgtgttctatgttgggtgcatgcatgtgaagac |
1546475 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 1588031 - 1588082
Alignment:
| Q |
18 |
cataatggagaatgcgcttgagagcaaacatgtgttctgtgttgggtgcatg |
69 |
Q |
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| T |
1588031 |
cataacggagaatgcgcttgagagcaagcatgtgttatgtgttgggtgcatg |
1588082 |
T |
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Target: scaffold0134 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 40545 - 40495
Alignment:
| Q |
30 |
tgcgcttgagagcaaacatgtgttctgtgttgggtgcatgcatgtggagac |
80 |
Q |
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| T |
40545 |
tgcgcttgagagcaatcatgtgttctgtgctgggtgcatgcatgtgaagac |
40495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 19329788 - 19329740
Alignment:
| Q |
32 |
cgcttgagagcaaacatgtgttctgtgttgggtgcatgcatgtggagac |
80 |
Q |
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| T |
19329788 |
cgcttgagagcaatcatgtgttctgtgctgggtgcatccatgtgaagac |
19329740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 45034373 - 45034319
Alignment:
| Q |
26 |
agaatgcgcttgagagcaaacatgtgttctgtgttgggtgcatgcatgtggagac |
80 |
Q |
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| T |
45034373 |
agaatgcgttttagagcaagcatgtgttctgtactgggtgcatgcatgtgaagac |
45034319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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